Beginning of main content
Trip Type
Flight 1
Flight 2
Flight 3
Flight 4
Flight 5

Search 590,000 properties worldwide.

Search over a million flights, hotels, packages, and more

No Expedia cancellation fee to change or cancel almost any hotel reservation.


Featured Morehead City Independent Hotels

See all 161 Hotels in Morehead City
The Inn At Pine Knoll Shores

The Inn At Pine Knoll Shores

511 Salter Path Rd, Pine Knoll Shores
3.5 out of 5.0

$69

$69
Islander Hotel & Resort

Islander Hotel & Resort

102 Islander Drive, Emerald Isle
3.0 out of 5.0

$76

$76
Oak Grove Motel

Oak Grove Motel

1305 Salter Path Rd, Salter Path
2.5 out of 5.0

$50

$50
Palm Suites

Palm Suites

602 W Fort Macon Rd, Atlantic Beach
2.5 out of 5.0

$61

$61
Sand Dollar Motel

Sand Dollar Motel

101 Henderson Blvd, Atlantic Beach
3.0 out of 5.0

$45

$45
Island Inn of Atlantic Beach

Island Inn of Atlantic Beach

215 W Fort Macon Rd, Atlantic Beach
2.5 out of 5.0

$62

$62
Sherwood Motel

Sherwood Motel

318 W Main St, Havelock
2.5 out of 5.0

$52

$52
Pecan Tree Inn

Pecan Tree Inn

116 Queen Street, Beaufort
4.0 out of 5.0

$100

$100
Inviting Island Cottage

Inviting Island Cottage

183 Johnson Rd, Harkers Island
Ocean View Escape / Full Resort Amenities!

Ocean View Escape / Full Resort Amenities!

1904 East Fort Macon Road, Atlantic Beach
Ocean Reef 16-b1, Ocean View, Private Beach Access And Pool!

Ocean Reef 16-b1, Ocean View, Private Beach Access And Pool!

2512 Ocean Drive, Emerald Isle
Oceanview Inn

Oceanview Inn

122 Fairview Drive, Emerald Isle
2.5 out of 5.0

$145

$145
Top Floor Oceanfront Prime Condo ~ Elevator ~ "jackpot"

Top Floor Oceanfront Prime Condo ~ Elevator ~ "jackpot"

9100 Reed Drive, Emerald Isle
Bogue Shores

Bogue Shores

1918 W. Fort Macon Rd, Atlantic Beach
3.5 out of 5.0

$70

$70
Beautiful Suite In Historic Beaufort, NC Home

Beautiful Suite In Historic Beaufort, NC Home

301 Broad Street, Beaufort
Newly Remodeled Nice Ocean Side Beach "mini" Condo

Newly Remodeled Nice Ocean Side Beach "mini" Condo

2401 W Fort Macon Rd, Atlantic Beach
******beautiful Newly Updated Mini Condo******

******beautiful Newly Updated Mini Condo******

2401 W. Fort Macon Road, Atlantic Beach
Spectacular Oceanfront 2BR Condo in Emerald Isle NC

Spectacular Oceanfront 2BR Condo in Emerald Isle NC

2513 Ocean Dr, Emerald Isle
Parkerton Inn

Parkerton Inn

1184 Hwy 58, Peletier
2.5 out of 5.0

$65

$65
NEW Listing. Beach AND Sound Access! GET THE Best Condo IN THE Area FOR Less

NEW Listing. Beach AND Sound Access! GET THE Best Condo IN THE Area FOR Less

1918 W Fort Macon Rd, Atlantic Beach

Recently booked Morehead City hotels

The Inn At Pine Knoll Shores
3.5 out of 5.0
Last booking: 2 minutes ago
DoubleTree by Hilton Atlantic Beach Oceanfront
4.0 out of 5.0
Last booking: 1 hour ago
Sand Dollar Motel
3.0 out of 5.0
Last booking: 1 hour ago
Quality Inn Morehead City
3.0 out of 5.0
Last booking: 2 hours ago
A Place at the Beach, a VRI Resort
3.0 out of 5.0
Last booking: 4 hours ago
Hampton Inn & Suites-Atlantic Beach
3.0 out of 5.0
Last booking: 7 hours ago
Bask Hotel at Big Rock Landing, an Ascend Collection Member
2.5 out of 5.0
Last booking: 7 hours ago
Oak Grove Motel
2.5 out of 5.0
Last booking: 9 hours ago
Econo Lodge
2.5 out of 5.0
Last booking: 13 hours ago

Pocket Guide: Independent Hotels in Morehead City

Search for hotels in Morehead City on Expedia. You can easily find your hotels in Morehead City using one of the methods below:

  • View our selection of featured hotels in Morehead City
  • Use the map to find hotels in the Morehead City neighborhood you prefer
  • Use the filters to see hotels in a specific area of Morehead City, select a specific theme, brand, or hotel class from basic (1 Star) to luxury hotels (5 Stars) in Morehead City
  • Enter your travel dates to view the best deals on hotels in Morehead City - while they last