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Featured San Diego County Independent Hotels

See all 1,927 Hotels in San Diego County
The Sofia Hotel

The Sofia Hotel

150 W Broadway, San Diego
4.0 out of 5.0
4.3 out of 5 (7,330 reviews)
Nice Hotel Overall very pretty Hotel!!! But the only thing it lacks is a place for breakfast. - 

$107

$107
The Horton Grand Hotel

The Horton Grand Hotel

311 Island Ave, San Diego
4.0 out of 5.0
4.3 out of 5 (3,499 reviews)
Clean room, friendly staff. Hotel was under construction so it got bit load in the morning and vale … - 

$72

$72
Bahia Resort Hotel

Bahia Resort Hotel

998 W Mission Bay Dr, San Diego
4.0 out of 5.0
4.1 out of 5 (4,452 reviews)
Dated but Excellent The hotel is a great location, super close to Sea World and Mission Beach. A short drive to almost … - 

$99

$99
California Suites Hotel

California Suites Hotel

5415 Clairemont Mesa Blvd, San Diego
2.5 out of 5.0
3.3 out of 5 (1,914 reviews)
Wonderful Staff The hotel staff were so polite. They provided excellent customer service and made sure I received e … - 

$64

$64
The Dana on Mission Bay

The Dana on Mission Bay

1710 W Mission Bay Dr, San Diego
4.0 out of 5.0
4.1 out of 5 (7,023 reviews)
Nice hotel very convenient We stayed for 5 days and really enjoyed the hotel. Excellent rooms, excellent staff and facilities … - 

$95

$95
The Atwood

The Atwood

1201 Hotel Circle South, San Diego
3.5 out of 5.0
3.8 out of 5 (1,025 reviews)
Visiting family Very good rate and close to freeways and attractions in SD. - 

$66

$66
Catamaran Resort and Spa

Catamaran Resort and Spa

3999 Mission Boulevard, San Diego
4.5 out of 5.0
4.2 out of 5 (2,473 reviews)
Close to beach and Amenities Not bad for the money however we were right next to the elevator bad Room. bathtub faucet had a hea … - 

$129

$129
Lakehouse Hotel and Resort

Lakehouse Hotel and Resort

1025 La Bonita Drive, San Marcos
4.5 out of 5.0
4.6 out of 5 (1,699 reviews)
Wonderful experience! The rooms were nice and clean, and the staff was wonderful. S’mores are a gre … - 

$139

$139
The Lafayette Hotel, Swim Club & Bungalows

The Lafayette Hotel, Swim Club & Bungalows

2223 El Cajon Blvd, San Diego
4.0 out of 5.0
3.9 out of 5 (2,910 reviews)
Wonderful Place, Rooms Need Comfort Everything about this gem of a historic hotel is fabulous except for two essential comfort factors; … - 

$84

$84
Urban Boutique Hotel

Urban Boutique Hotel

1654 Columbia Street, San Diego
3.5 out of 5.0
3.9 out of 5 (2,707 reviews)
Great hotel for our over night stay in San Diego. The location is just perfect. Friendly staff, cle … - 

$75

$75
Viejas Casino & Resort

Viejas Casino & Resort

5000 Willows Road, Alpine
4.5 out of 5.0
4.6 out of 5 (679 reviews)
Nice clean and comfortable. Great customer service. - 

$120

$120
Bay Club Hotel & Marina

Bay Club Hotel & Marina

2131 Shelter Island Dr, San Diego
4.0 out of 5.0
4.2 out of 5 (1,988 reviews)
Nice hotel in the Bay Our stay was very nice. The staff was very helpful and friendly :-) We had a breakfast and dinner a … - 

$99

$99
Consulate Hotel Airport/Sea World San Diego Area

Consulate Hotel Airport/Sea World San Diego Area

2901 Nimitz Blvd, San Diego
2.5 out of 5.0
2.6 out of 5 (949 reviews)
Very nice hotel, The rooms clean and comfortable. The experience was very comfortable and convenient. The rooms large and with a view form my 6th flo … - 

$51

$51
Bay Inn and Suites at Seaworld

Bay Inn and Suites at Seaworld

3325 Midway Dr, San Diego
2.5 out of 5.0
2.7 out of 5 (1,647 reviews)
MARINA Very Quiet, great for fishing Central location Within my budget - 

$45

$45
Porto Vista Hotel

Porto Vista Hotel

1835 Columbia St, San Diego
4.0 out of 5.0
3.4 out of 5 (2,037 reviews)
Great Stay Nice that Hotel is getting a much needed renovation Can never beat the view from upstairs area - 

$93

$93
Harborview Inn & Suites San Diego Harbor

Harborview Inn & Suites San Diego Harbor

550 West Grape St, San Diego
2.5 out of 5.0
2.9 out of 5 (1,862 reviews)
Nice hotel good location The hotel is located in down town San Diego. Very convenient and accessable to good restaurant publ … - 

$55

$55
Kings Inn San Diego - Seaworld - Zoo

Kings Inn San Diego - Seaworld - Zoo

1333 Hotel Cir S, San Diego
3.0 out of 5.0
3.9 out of 5 (4,592 reviews)
Welcoming in great location The hotel staff was very polite and welcoming. The rooms are nice with comfortable beds. The only t … - 

$74

$74
E-Z 8 Motel Old Town

E-Z 8 Motel Old Town

4747 Pacific Highway, San Diego
2.5 out of 5.0
3.0 out of 5 (482 reviews)
Close to shopping Close to Old Town, restaurants, shopping and freeway. - 

$45

$45
Gaslamp Plaza Suites

Gaslamp Plaza Suites

520 E St, San Diego
4.0 out of 5.0
4.1 out of 5 (1,849 reviews)
Gem in the Gaslamp Quarter Beautiful, older hotel in the historic district of San Diego. Well refurbished. Great breakfast on … - 

$99

$99
Carlsbad By The Sea Resort

Carlsbad By The Sea Resort

850 Palomar Airport Road, Carlsbad
3.0 out of 5.0
3.8 out of 5 (3,886 reviews)
Convenient location to activities. Nice grounds, good breakfast, excellent temperature control (central air) in room. Very quiet. - 

$95

$95
Map

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Independent San Diego County Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Diego County, California. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Diego County hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Diego County Independent locations may even offer extra little benefits and discounts for frequent travelers.