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Featured San Diego County Independent Hotels

See all 2,127 Hotels in San Diego County
The Sofia Hotel

The Sofia Hotel

150 W Broadway, San Diego
4.0 out of 5.0
4.3 out of 5 (7,476 reviews)
Comfortable hotel close to the Gaslamp Quarter Smart hotel offering comfortable, clean rooms, fitness centre, bar and restaurant in ideal situatio … - 

$143

$143
The Dana on Mission Bay

The Dana on Mission Bay

1710 W Mission Bay Dr, San Diego
4.0 out of 5.0
4.1 out of 5 (7,120 reviews)
Beautiful ocean view The balcony’s with ocean view very relaxing. The swimming pools very kid friendly, the shuttle to s … - 

$134

$134
The Horton Grand Hotel

The Horton Grand Hotel

311 Island Ave, San Diego
4.0 out of 5.0
4.3 out of 5 (3,590 reviews)
Charming Hotel, close to everything The Horton Grand had so much character. The Food and Beverage staff was awesome! I was very comfort … - 

$149

$149
La Pensione Hotel

La Pensione Hotel

606 West Date Street, San Diego
3.0 out of 5.0
4.0 out of 5 (1,382 reviews)
Good location Little Italy Close to Balboa Park and downtown, fantastic restaurants & Happy Hours nearby. - 

$128

$128
Bahia Resort Hotel

Bahia Resort Hotel

998 W Mission Bay Dr, San Diego
3.5 out of 5.0
4.1 out of 5 (4,571 reviews)
Great location When researching our first trip to the San Diego area, I was conflicted between the various areas. … - 

$159

$159
Catamaran Resort and Spa

Catamaran Resort and Spa

3999 Mission Boulevard, San Diego
4.5 out of 5.0
4.2 out of 5 (2,465 reviews)
Nice hotel, on bay and close to ocean The hotel and staff were very good. Restaurant was excellent. Beach on bayside was good, and proxim … - 

$179

$179
Kings Inn San Diego - Seaworld - Zoo

Kings Inn San Diego - Seaworld - Zoo

1333 Hotel Cir S, San Diego
3.0 out of 5.0
3.9 out of 5 (4,655 reviews)
Clean hotel Older facility clean Kept up reasonably well. Seemed like short hours on restaurant . staff was ple … - 

$74

$74
The Atwood

The Atwood

1201 Hotel Circle South, San Diego
3.0 out of 5.0
3.8 out of 5 (1,142 reviews)
It was a great hotel with great assistance. The check in was amazing since they were helpful with directions and where to spend time in San Die … - 

$61

$61
The Beach Cottages

The Beach Cottages

4255 Ocean Boulevard, San Diego
3.0 out of 5.0
4.3 out of 5 (227 reviews)
Great place by the beach Amazing location. No pool or restaurant but the room was clean and location was perfect. Great valu … - 

$116

$116
Gaslamp Plaza Suites

Gaslamp Plaza Suites

520 E St, San Diego
4.0 out of 5.0
4.1 out of 5 (1,862 reviews)
Clean hotel with a great location The room is a lot larger than I expected the only complaint I had … - 

$139

$139
Lakehouse Hotel and Resort

Lakehouse Hotel and Resort

1025 La Bonita Drive, San Marcos
4.5 out of 5.0
4.6 out of 5 (1,729 reviews)
Nice hotel - staff very friendly Restaurant on premises very nice with delicious menu. Beautiful view of lake - 

$119

$119
California Suites Hotel

California Suites Hotel

5415 Clairemont Mesa Blvd, San Diego
2.5 out of 5.0
3.3 out of 5 (1,936 reviews)
Chose this hotel for the centralized location and value. I didn't know what to expect in terms of a … - 

$64

$64
Bristol Hotel - A Greystone Hotel

Bristol Hotel - A Greystone Hotel

1055 1st Ave, San Diego
4.0 out of 5.0
4.2 out of 5 (2,153 reviews)
Very nice modern hotel Very nice hotel they gave us a room with a great view of downtown. - 

$175

$175
Bay Club Hotel & Marina

Bay Club Hotel & Marina

2131 Shelter Island Dr, San Diego
3.5 out of 5.0
4.2 out of 5 (1,995 reviews)
Nice view of San Diego Bay We stayed here one night only. Enjoyed the view, a walk along the bay and dinner at the restaurant. - 

$150

$150
Grand Pacific Palisades Resort & Hotel

Grand Pacific Palisades Resort & Hotel

5805 Armada Drive, Carlsbad
3.5 out of 5.0
4.2 out of 5 (1,702 reviews)
Definitely a place we will return to! Pleasantly surprised by every aspect of our stay. My only regret is that we only had time for one d … - 

$111

$111
La Jolla Shores Hotel

La Jolla Shores Hotel

8110 Camino Del Oro, La Jolla
3.5 out of 5.0
4.2 out of 5 (1,838 reviews)
Over the top friendliness! We arrived at the hotel and the Receptionist was so nice and helpful. The rest of the stay every em … - 

$229

$229
Pleasant Inn

Pleasant Inn

5550 Clairemont Mesa Blvd, San Diego
3.0 out of 5.0
4.1 out of 5 (594 reviews)
Good Good for a good normal motel. Good breakfast. Clean. No complaints. - 

$72

$72
Lodge of La Mesa (A Quiet Hotel For Adults Only)

Lodge of La Mesa (A Quiet Hotel For Adults Only)

7911 University Ave, La Mesa
2.5 out of 5.0
3.7 out of 5 (643 reviews)
Ok place I came in early to ask about check in, and the guy at the desk was very rude, this was around 3:15p … - 

$60

$60
Ocean Beach Hotel

Ocean Beach Hotel

5080 Newport Ave., San Diego
2.5 out of 5.0
3.8 out of 5 (1,295 reviews)
Having the beach and stores close is convenient. Great stay close to the beach and great shops/bars/restaurants - 

$150

$150
Surfer Beach Hotel

Surfer Beach Hotel

711 Pacific Beach Drive, San Diego
3.5 out of 5.0
3.6 out of 5 (1,748 reviews)
Great spot.... right in the middle of it all You cant beat the location.. the hotel itself is a little old.. but, to me that added to the experi … - 

$159

$159

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Independent San Diego County Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Diego County, California. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Diego County hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Diego County Independent locations may even offer extra little benefits and discounts for frequent travelers.