Beginning of main content
Trip Type
Flight 1
Flight 2
Flight 3
Flight 4
Flight 5

Search 321,000 hotels worldwide.

Get the best price available for your trip.

No Expedia cancellation fee to change or cancel almost any hotel reservation.


Featured San Diego County Independent Hotels

See all 1,593 Hotels in San Diego County
Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego

1 Market Pl, San Diego
4.0 out of 5.0
4.5 out of 5 (7,490 reviews)
Impressive Our stay at the hotel was excellent. The staff was friendly and helpful. The Hotel itself was impre … - 

$127

$127
The Sofia Hotel

The Sofia Hotel

150 W Broadway, San Diego
3.5 out of 5.0
4.3 out of 5 (7,238 reviews)
just fine good to reach by bus to and from the airport. Not sure, except for squeezing more money out of cust … - 

$107

$107
Hard Rock Hotel San Diego

Hard Rock Hotel San Diego

207 5th Ave, San Diego
4.0 out of 5.0
4.3 out of 5 (3,213 reviews)
great location Excellent hotel. Right downtown. Parked across the street for much less but highly recommend it. - 

$149

$149
The Horton Grand Hotel

The Horton Grand Hotel

311 Island Ave, San Diego
3.5 out of 5.0
4.2 out of 5 (3,519 reviews)
Lovely hotel Spent 5 nights in this hotel and we loved it, right close to all the bars,restaurants and shops!! V … - 

$80

$80
Hyatt Regency La Jolla

Hyatt Regency La Jolla

3777 La Jolla Village Drive, San Diego
4.0 out of 5.0
4.3 out of 5 (2,542 reviews)
Friendly staff We had an amazing experience during our stay. The receptionist Jazmin made sure that our stay in ho … - 

$134

$134
Town and Country San Diego

Town and Country San Diego

500 Hotel Cir N, San Diego
3.5 out of 5.0
3.3 out of 5 (1,580 reviews)
Good staff. Good location. But vending machine was broken. So I cannot get bottle of water near my … - 

$104

$104
Ramada San Diego North Hotel and Conference Center

Ramada San Diego North Hotel and Conference Center

5550 Kearny Mesa Rd, San Diego
3.0 out of 5.0
3.7 out of 5 (3,505 reviews)
2night stay Had a great stay at the Ramada. Great staff. Entire property including the pool was clean. Close to … - 

$72

$72
California Suites Hotel

California Suites Hotel

5415 Clairemont Mesa Blvd, San Diego
2.0 out of 5.0
3.5 out of 5 (3,459 reviews)
Very good hotel It was clean and quiet, with convenient parking, nice grounds and a place I will use again. - 

$64

$64
Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

1441 Quivira Rd, San Diego
4.0 out of 5.0
3.9 out of 5 (3,382 reviews)
Wonderful We loved the room, the view of Mission bay was outstanding. The fact the hotel was only blocks from … - 

$123

$123
Paradise Point Resort & Spa

Paradise Point Resort & Spa

1404 Vacation Rd, San Diego
4.0 out of 5.0
3.8 out of 5 (2,659 reviews)
A couple of things First I want to temper this review by saying that the staff are wonderful and the grounds beautiful … - 

$149

$149
Motel 6 San Diego - Hotel Circle - Mission Valley

Motel 6 San Diego - Hotel Circle - Mission Valley

2424 Hotel Circle North, San Diego
2.0 out of 5.0
3.2 out of 5 (1,084 reviews)
The hotel staff was very nice and friendly the hotel was clean but the beds were a little rough not … - 

$60

$60
Catamaran Resort and Spa

Catamaran Resort and Spa

3999 Mission Boulevard, San Diego
4.0 out of 5.0
4.2 out of 5 (3,522 reviews)
Great location on Mission Bay We were in town for a wedding. This was midway between the airport and the wedding venue. Great loc … - 

$149

$149
Hyatt Place San Diego/Vista-Carlsbad

Hyatt Place San Diego/Vista-Carlsbad

2645 South Melrose Drive, Vista
3.0 out of 5.0
4.5 out of 5 (1,842 reviews)
Great location! Great location, central to all the places you would want to go. Friendly staff!, easy parking. - 

$109

$109
Bahia Resort Hotel

Bahia Resort Hotel

998 W Mission Bay Dr, San Diego
3.5 out of 5.0
4.1 out of 5 (4,397 reviews)
Loved every minute Beautiful clean comfortable room, kitchen a big convenience as we didn't want to search around for … - 

$99

$99
The Atwood

The Atwood

1201 Hotel Circle South, San Diego
3.0 out of 5.0
3.8 out of 5 (983 reviews)
Pleasantly surprised. Honestly didn't expect much for the rate we got but my family and I were pleasantly surprised. Room … - 

$62

$62
Sheraton San Diego Hotel and Marina

Sheraton San Diego Hotel and Marina

1380 Harbor Island Dr, San Diego
4.0 out of 5.0
4.0 out of 5 (6,803 reviews)
Great view and comfortable room. Staff was very helpful when we needed directions and the restaurant food was great. - 

$79

$79
Urban Boutique Hotel

Urban Boutique Hotel

1654 Columbia Street, San Diego
3.0 out of 5.0
3.9 out of 5 (2,654 reviews)
Nice hotel with friendly staff in a great location The staff was very friendly and helpful. I like smaller hotels and this one was great - very clean … - 

$80

$80
Red Roof Inn San Diego - Pacific Beach/SeaWorld Area

Red Roof Inn San Diego - Pacific Beach/SeaWorld Area

4545 Mission Bay Dr, San Diego
2.0 out of 5.0
3.2 out of 5 (1,069 reviews)
Price and very comfortable Is very nice, we have little be trouble with noise from up stair apartment,Mr. Jayson from overnigh … - 

$64

$64
La Quinta Inn & Suites Carlsbad - Legoland Area

La Quinta Inn & Suites Carlsbad - Legoland Area

760 Macadamia Dr, Carlsbad
2.5 out of 5.0
4.0 out of 5 (2,267 reviews)
Pet friendly, Close to freeway, beach, grocery store, Legoland. - 

$89

$89
Bay Inn and Suites at Seaworld

Bay Inn and Suites at Seaworld

3325 Midway Dr, San Diego
2.0 out of 5.0
2.7 out of 5 (1,743 reviews)
MARINA Very Quiet, great for fishing Central location Within my budget - 

$49

$49
Map

Recently booked San Diego County hotels

Heritage Inn San Diego Near SeaWorld
2.0 out of 5.0
Last booking: 1 minute ago
Rodeway Inn Fallbrook
2.0 out of 5.0
Last booking: 1 minute ago
Inn By The Sea La Jolla
2.5 out of 5.0
Last booking: 4 minutes ago
Holiday Inn Carlsbad
3.0 out of 5.0
Last booking: 4 minutes ago
Borrego Springs Resort Golf Club and Spa
3.0 out of 5.0
Last booking: 5 minutes ago
Porto Vista Hotel
3.0 out of 5.0
Last booking: 7 minutes ago
Embassy Suites by Hilton San Diego Bay Downtown
4.0 out of 5.0
Last booking: 8 minutes ago
DoubleTree by Hilton Hotel San Diego - Mission Valley
4.0 out of 5.0
Last booking: 9 minutes ago
Super 8 Oceanside
2.0 out of 5.0
Last booking: 9 minutes ago

Independent San Diego County Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Diego County, California. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Diego County hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Diego County Independent locations may even offer extra little benefits and discounts for frequent travelers.