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Featured San Diego County Independent Hotels

See all 2,284 Hotels in San Diego County
The Sofia Hotel

The Sofia Hotel

150 W Broadway, San Diego
4.0 out of 5.0

$143

$143
The Dana on Mission Bay

The Dana on Mission Bay

1710 W Mission Bay Dr, San Diego
4.0 out of 5.0

$119

$119
The Horton Grand Hotel

The Horton Grand Hotel

311 Island Ave, San Diego
4.0 out of 5.0

$149

$149
La Pensione Hotel

La Pensione Hotel

606 West Date Street, San Diego
3.0 out of 5.0
Bahia Resort Hotel

Bahia Resort Hotel

998 W Mission Bay Dr, San Diego
3.5 out of 5.0

$121

$121
Catamaran Resort and Spa

Catamaran Resort and Spa

3999 Mission Boulevard, San Diego
4.5 out of 5.0

$179

$179
Kings Inn San Diego - Seaworld - Zoo

Kings Inn San Diego - Seaworld - Zoo

1333 Hotel Cir S, San Diego
3.0 out of 5.0
The Atwood

The Atwood

1201 Hotel Circle South, San Diego
3.0 out of 5.0
The Beach Cottages

The Beach Cottages

4255 Ocean Boulevard, San Diego
3.0 out of 5.0
Gaslamp Plaza Suites

Gaslamp Plaza Suites

520 E St, San Diego
4.0 out of 5.0
Lakehouse Hotel and Resort

Lakehouse Hotel and Resort

1025 La Bonita Drive, San Marcos
4.5 out of 5.0

$111

$111
California Suites Hotel

California Suites Hotel

5415 Clairemont Mesa Blvd, San Diego
2.5 out of 5.0

$56

$56
Bristol Hotel - A Greystone Hotel

Bristol Hotel - A Greystone Hotel

1055 1st Ave, San Diego
4.0 out of 5.0
Bay Club Hotel & Marina

Bay Club Hotel & Marina

2131 Shelter Island Dr, San Diego
3.5 out of 5.0
Grand Pacific Palisades Resort & Hotel

Grand Pacific Palisades Resort & Hotel

5805 Armada Drive, Carlsbad
3.5 out of 5.0
La Jolla Shores Hotel

La Jolla Shores Hotel

8110 Camino Del Oro, La Jolla
3.5 out of 5.0
Pleasant Inn

Pleasant Inn

5550 Clairemont Mesa Blvd, San Diego
3.0 out of 5.0

$69

$69
Lodge of La Mesa (A Quiet Hotel For Adults Only)

Lodge of La Mesa (A Quiet Hotel For Adults Only)

7911 University Ave, La Mesa
2.5 out of 5.0

$50

$50
Ocean Beach Hotel

Ocean Beach Hotel

5080 Newport Ave., San Diego
2.5 out of 5.0

$130

$130
Surfer Beach Hotel

Surfer Beach Hotel

711 Pacific Beach Drive, San Diego
3.5 out of 5.0

Recently booked San Diego County hotels

Embassy Suites by Hilton San Diego Bay Downtown
4.5 out of 5.0
Last booking: 1 minute ago
Hotel Iris - San Diego
3.0 out of 5.0
Last booking: 5 minutes ago
Ramada Carlsbad
3.0 out of 5.0
Last booking: 8 minutes ago
Motel 6 Carlsbad East
2.5 out of 5.0
Last booking: 8 minutes ago
Motel 6 San Ysidro - San Diego / Border
2.0 out of 5.0
Last booking: 10 minutes ago
Hampton Inn San Diego Del Mar
3.0 out of 5.0
Last booking: 14 minutes ago
Residence Inn By Marriott San Diego Central
3.5 out of 5.0
Last booking: 33 minutes ago
Comfort Inn & Suites San Diego - Zoo SeaWorld Area
3.0 out of 5.0
Last booking: 39 minutes ago
Hilton San Diego Bayfront
4.0 out of 5.0
Last booking: 51 minutes ago

Independent San Diego County Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Diego County, California. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Diego County hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Diego County Independent locations may even offer extra little benefits and discounts for frequent travelers.