Beginning of main content
Trip Type
Flight 1
Flight 2
Flight 3
Flight 4
Flight 5

Search 321,000 hotels worldwide.

Get the best price available for your trip.

No Expedia cancellation fee to change or cancel almost any hotel reservation.


Featured San Diego County Independent Hotels

See all 1,593 Hotels in San Diego County
Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego

1 Market Pl, San Diego
4.0 out of 5.0
4.5 out of 5 (7,505 reviews)
Work trip This was my first time staying at the Manchester Grand Hyatt. It was clean, comfortable, and quiet. - 

$118

$118
The Sofia Hotel

The Sofia Hotel

150 W Broadway, San Diego
3.5 out of 5.0
4.3 out of 5 (7,246 reviews)
Nice and affordable Good place to stay. The room was very comfortable and the check in and check out process was great. … - 

$107

$107
The Horton Grand Hotel

The Horton Grand Hotel

311 Island Ave, San Diego
3.5 out of 5.0
4.2 out of 5 (3,530 reviews)
We celebrated Veteran's Day in Dan Diego. The hotel is ideally located in the Gaslamp district and is in walking distance to Little Italy, an … - 

$80

$80
Hard Rock Hotel San Diego

Hard Rock Hotel San Diego

207 5th Ave, San Diego
4.0 out of 5.0
4.3 out of 5 (3,214 reviews)
First time in Gaslamp district. Check was fast an easy room was very clean an nice. Liked how the night scene was a walk out the fr … - 

$149

$149
Ramada San Diego North Hotel and Conference Center

Ramada San Diego North Hotel and Conference Center

5550 Kearny Mesa Rd, San Diego
3.0 out of 5.0
3.7 out of 5 (3,509 reviews)
2night stay Had a great stay at the Ramada. Great staff. Entire property including the pool was clean. Close to … - 

$72

$72
Town and Country San Diego

Town and Country San Diego

500 Hotel Cir N, San Diego
3.5 out of 5.0
3.3 out of 5 (1,587 reviews)
Good staff. Good location. But vending machine was broken. So I cannot get bottle of water near my … - 

$104

$104
Hyatt Regency La Jolla

Hyatt Regency La Jolla

3777 La Jolla Village Drive, San Diego
4.0 out of 5.0
4.3 out of 5 (2,545 reviews)
Friendly staff We had an amazing experience during our stay. The receptionist Jazmin made sure that our stay in ho … - 

$99

$99
Paradise Point Resort & Spa

Paradise Point Resort & Spa

1404 Vacation Rd, San Diego
4.0 out of 5.0
3.8 out of 5 (2,663 reviews)
Great stay But! They should let you know that parking is not included in there passport savings that is extra!! Jus … - 

$104

$104
California Suites Hotel

California Suites Hotel

5415 Clairemont Mesa Blvd, San Diego
2.0 out of 5.0
3.5 out of 5 (3,463 reviews)
Good It was good. It was also great. It was also excellent. It was also swell. It was also fun. - 

$64

$64
Bahia Resort Hotel

Bahia Resort Hotel

998 W Mission Bay Dr, San Diego
3.5 out of 5.0
4.1 out of 5 (4,400 reviews)
Loved every minute Beautiful clean comfortable room, kitchen a big convenience as we didn't want to search around for … - 

$99

$99
Hyatt Place San Diego/Vista-Carlsbad

Hyatt Place San Diego/Vista-Carlsbad

2645 South Melrose Drive, Vista
3.0 out of 5.0
4.5 out of 5 (1,847 reviews)
Great, spacious room for the price Clean, spacious, updated room for the price. Staff was cheerful, courteous, and helpful. Free break … - 

$109

$109
Motel 6 San Diego - Hotel Circle - Mission Valley

Motel 6 San Diego - Hotel Circle - Mission Valley

2424 Hotel Circle North, San Diego
2.0 out of 5.0
3.2 out of 5 (1,086 reviews)
The hotel staff was very nice and friendly the hotel was clean but the beds were a little rough not … - 

$60

$60
The Westin San Diego

The Westin San Diego

400 W Broadway, San Diego
4.0 out of 5.0
4.2 out of 5 (3,274 reviews)
Great Hotel Close to the bay and great restaurants Leon @ the front desk was very friendly, room was clean and bed is super comfy! - 

$109

$109
Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

1441 Quivira Rd, San Diego
4.0 out of 5.0
3.9 out of 5 (3,383 reviews)
Wonderful We loved the room, the view of Mission bay was outstanding. The fact the hotel was only blocks from … - 

$85

$85
The Atwood

The Atwood

1201 Hotel Circle South, San Diego
3.0 out of 5.0
3.8 out of 5 (985 reviews)
Pleasantly surprised. Honestly didn't expect much for the rate we got but my family and I were pleasantly surprised. Room … - 

$62

$62
Red Roof Inn San Diego - Pacific Beach/SeaWorld Area

Red Roof Inn San Diego - Pacific Beach/SeaWorld Area

4545 Mission Bay Dr, San Diego
2.0 out of 5.0
3.2 out of 5 (1,072 reviews)
Price and very comfortable Is very nice, we have little be trouble with noise from up stair apartment,Mr. Jayson from overnigh … - 

$64

$64
Good Nite Inn San Diego near SeaWorld

Good Nite Inn San Diego near SeaWorld

3880 Greenwood St, San Diego
2.5 out of 5.0
3.2 out of 5 (4,876 reviews)
Rooms was clean and brand-new after renovation. Front staff was very kind and polite. But keys some … - 

$53

$53
Loews Coronado Bay Resort

Loews Coronado Bay Resort

4000 Coronado Bay Rd, Coronado
4.0 out of 5.0
4.3 out of 5 (4,254 reviews)
Wonderful views and and quality service This hotel is carefully maintained, from the beautiful landscaping to the spotless rooms and resort … - 

$179

$179
Urban Boutique Hotel

Urban Boutique Hotel

1654 Columbia Street, San Diego
3.0 out of 5.0
3.9 out of 5 (2,657 reviews)
Very convenient location. Close to the bay and many restaurants. - 

$80

$80
The Dana on Mission Bay

The Dana on Mission Bay

1710 W Mission Bay Dr, San Diego
3.5 out of 5.0
4.1 out of 5 (6,957 reviews)
We received a room upgrade at check in. Pleasant surprise! The room was beautiful and the bed/pillo … - 

$78

$78
Map

Recently booked San Diego County hotels

HYATT house San Diego/Carlsbad
3.0 out of 5.0
Last booking: 16 minutes ago
Sheraton San Diego Hotel and Marina
4.0 out of 5.0
Last booking: 41 minutes ago
Viejas Casino & Resort
4.0 out of 5.0
Last booking: 1 hour ago
Holiday Inn San Diego-Bayside
3.0 out of 5.0
Last booking: 1 hour ago
Homewood Suites by Hilton San Diego Downtown
3.0 out of 5.0
Last booking: 2 hours ago
Clarion Hotel National City San Diego South
2.5 out of 5.0
Last booking: 2 hours ago
Urban Boutique Hotel
3.0 out of 5.0
Last booking: 2 hours ago
Manchester Grand Hyatt San Diego
4.0 out of 5.0
Last booking: 2 hours ago
Carlsbad By The Sea Resort
3.0 out of 5.0
Last booking: 2 hours ago

Independent San Diego County Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Diego County, California. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Diego County hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Diego County Independent locations may even offer extra little benefits and discounts for frequent travelers.