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Featured San Diego County Independent Hotels

See all 2,284 Hotels in San Diego County
The Sofia Hotel

The Sofia Hotel

150 W Broadway, San Diego
4.0 out of 5.0
4.3 out of 5 (7,482 reviews)
Small boutique hotel great location Definitely a nice upscale hotel although room size is small. Expensive valet but everyone was helpf … - 

$143

$143
The Dana on Mission Bay

The Dana on Mission Bay

1710 W Mission Bay Dr, San Diego
4.0 out of 5.0
4.1 out of 5 (7,126 reviews)
Great tropical grounds Really enjoyed tropical surrounding and pool. Very comfortable bed. Nice place to stay. - 

$144

$144
The Horton Grand Hotel

The Horton Grand Hotel

311 Island Ave, San Diego
4.0 out of 5.0
4.3 out of 5 (3,600 reviews)
Charming Hotel, close to everything The Horton Grand had so much character. The Food and Beverage staff was awesome! I was very comfort … - 

$149

$149
La Pensione Hotel

La Pensione Hotel

606 West Date Street, San Diego
3.0 out of 5.0
4.0 out of 5 (1,386 reviews)
great location, beautiful hotel, very clean had a great stay here, staff was friendly and helpful, rooms were clean, location was great! If I h … - 

$128

$128
Bahia Resort Hotel

Bahia Resort Hotel

998 W Mission Bay Dr, San Diego
3.5 out of 5.0
4.1 out of 5 (4,587 reviews)
We spend 5 amazing days at the resort. Staff was awesome, room was clean, roomy and comfortable, th … - 

$159

$159
Catamaran Resort and Spa

Catamaran Resort and Spa

3999 Mission Boulevard, San Diego
4.5 out of 5.0
4.2 out of 5 (2,466 reviews)
Nice hotel, on bay and close to ocean The hotel and staff were very good. Restaurant was excellent. Beach on bayside was good, and proxim … - 

$179

$179
Kings Inn San Diego - Seaworld - Zoo

Kings Inn San Diego - Seaworld - Zoo

1333 Hotel Cir S, San Diego
3.0 out of 5.0
3.9 out of 5 (4,657 reviews)
Pleasant surprise Clean, bed was comfortable, front staff was extra nice - this is a very nice hotel for a "budget" h … - 

$74

$74
The Atwood

The Atwood

1201 Hotel Circle South, San Diego
3.0 out of 5.0
3.8 out of 5 (1,151 reviews)
Dog Friendly is generous, but still a nice hotel I travel to SD often and usually bring my dog with me since he loves the dog beaches. Over the past … - 

$61

$61
The Beach Cottages

The Beach Cottages

4255 Ocean Boulevard, San Diego
3.0 out of 5.0
4.3 out of 5 (228 reviews)
Great place by the beach Amazing location. No pool or restaurant but the room was clean and location was perfect. Great valu … - 

$116

$116
Gaslamp Plaza Suites

Gaslamp Plaza Suites

520 E St, San Diego
4.0 out of 5.0
4.2 out of 5 (1,866 reviews)
Great hotel near restaurants, bars and transport This hotel is very well located in the Gaslamp Quarter of San Diego. Public transport is close by, … - 

$119

$119
Lakehouse Hotel and Resort

Lakehouse Hotel and Resort

1025 La Bonita Drive, San Marcos
4.5 out of 5.0
4.6 out of 5 (1,733 reviews)
Beautiful Location & Stay My fiancé and I came in for the weekend. All of San Diego was pretty much booked out due to an even … - 

$119

$119
California Suites Hotel

California Suites Hotel

5415 Clairemont Mesa Blvd, San Diego
2.5 out of 5.0
3.3 out of 5 (1,935 reviews)
Enjoyed our stay Enjoyed our stay, staff friendly, hotel in a good location- easy access to freeways, shopping. - 

$64

$64
Bristol Hotel - A Greystone Hotel

Bristol Hotel - A Greystone Hotel

1055 1st Ave, San Diego
4.0 out of 5.0
4.2 out of 5 (2,152 reviews)
Good location Great location, easy walking distance to Gastown and with slightly longer walk Little Italy, 992 bu … - 

$179

$179
Bay Club Hotel & Marina

Bay Club Hotel & Marina

2131 Shelter Island Dr, San Diego
3.5 out of 5.0
4.2 out of 5 (1,996 reviews)
Splendid stay Check in was super easy, staff were nice and helpful. Great view of the harbor. Location was excell … - 

$150

$150
Grand Pacific Palisades Resort & Hotel

Grand Pacific Palisades Resort & Hotel

5805 Armada Drive, Carlsbad
3.5 out of 5.0
4.2 out of 5 (1,703 reviews)
Beautiful views and close to Legoland Loved this hotel and the Karl Strauss Brewery right next door. Fun little playground for the kids a … - 

$111

$111
La Jolla Shores Hotel

La Jolla Shores Hotel

8110 Camino Del Oro, La Jolla
3.5 out of 5.0
4.2 out of 5 (1,845 reviews)
Beach side hotel when you guest lecture at UCSD Great old school hotel with a view of the beach from the bar - 

$229

$229
Pleasant Inn

Pleasant Inn

5550 Clairemont Mesa Blvd, San Diego
3.0 out of 5.0
4.1 out of 5 (601 reviews)
Very good stay At this price we're surprised by the positive experience. Room was clean. Staff polite and helpful. … - 

$72

$72
Lodge of La Mesa (A Quiet Hotel For Adults Only)

Lodge of La Mesa (A Quiet Hotel For Adults Only)

7911 University Ave, La Mesa
2.5 out of 5.0
3.7 out of 5 (645 reviews)
Quiet motel Kids and pets are not allowed, even to go to the room for a minute. It’s ok for me as we are only t … - 

$60

$60
Ocean Beach Hotel

Ocean Beach Hotel

5080 Newport Ave., San Diego
2.5 out of 5.0
3.8 out of 5 (1,297 reviews)
Wasn't bad at all. Just really thin walls. But overall perfect view of the beach and very clean roo … - 

$150

$150
Surfer Beach Hotel

Surfer Beach Hotel

711 Pacific Beach Drive, San Diego
3.5 out of 5.0
3.6 out of 5 (1,746 reviews)
Great spot.... right in the middle of it all You cant beat the location.. the hotel itself is a little old.. but, to me that added to the experi … - 

$159

$159
Map

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Independent San Diego County Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Diego County, California. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Diego County hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Diego County Independent locations may even offer extra little benefits and discounts for frequent travelers.