Beginning of main content
Trip Type
Flight 1
Flight 2
Flight 3
Flight 4
Flight 5

Search 321,000 hotels worldwide.

Get the price guarantee available for your trip.

No Expedia cancellation fee to change or cancel almost any hotel reservation.


Featured San Diego County Independent Hotels

See all 1,454 Hotels in San Diego County
The Sofia Hotel

The Sofia Hotel

150 W Broadway, San Diego
3.5 out of 5.0
4.3 out of 5 (2,753 reviews)
Beautiful place to stay! Great place to stay and close and within walking distance to many things in San Diego. - 

$113

$113
Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego

1 Market Pl, San Diego
4.0 out of 5.0
4.5 out of 5 (3,216 reviews)
First time I have experience a dirty room I absolutely love this hotel, it is the only hotel I try to stay at every time I am in San Diego wi … - 

$170

$170
Hard Rock Hotel San Diego

Hard Rock Hotel San Diego

207 5th Ave, San Diego
4.0 out of 5.0
4.2 out of 5 (1,084 reviews)
Great stay! Room was clean and very roomy, we got a suite. Check in was fast and employees were friendly. Third … - 

$179

$179
Town and Country San Diego

Town and Country San Diego

500 Hotel Cir N, San Diego
3.5 out of 5.0
3.1 out of 5 (497 reviews)
Our Anniversary Place Our stay here was great.. friendly staff, great environment, quite, clean, very modern and spacious … - 

$90

$90
The Horton Grand Hotel

The Horton Grand Hotel

311 Island Ave, San Diego
3.5 out of 5.0
4.2 out of 5 (1,041 reviews)
Convenient and close by to gas lamp district and even Petco park. Room was comfortable and spacious … - 

$102

$102
Hyatt Regency La Jolla

Hyatt Regency La Jolla

3777 La Jolla Village Drive, San Diego
4.0 out of 5.0
4.3 out of 5 (1,003 reviews)
Very nice hotel We had a good stay. Staff were very courteous and helpful - 

$134

$134
Ramada San Diego North Hotel and Conference Center

Ramada San Diego North Hotel and Conference Center

5550 Kearny Mesa Rd, San Diego
3.0 out of 5.0
3.6 out of 5 (1,057 reviews)
Nice hotel and close to UCSD, downtown and beach Room is comfortable, clean and nice, but the staff at the front desk were not nice, the people I sp … - 

$98

$98
Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

1441 Quivira Rd, San Diego
4.0 out of 5.0
3.8 out of 5 (1,544 reviews)
Nice hotel in terms of entertainment for the kids. A little underwhelmed by the room itself and the … - 

$123

$123
Sheraton San Diego Hotel and Marina

Sheraton San Diego Hotel and Marina

1380 Harbor Island Dr, San Diego
4.0 out of 5.0
3.9 out of 5 (2,778 reviews)
Across the bay! Great bayside view, large room, excellent service. We had a pleasant, relaxing stay - includes pool … - 

$159

$159
California Suites Hotel

California Suites Hotel

5415 Clairemont Mesa Blvd, San Diego
2.0 out of 5.0
3.4 out of 5 (1,118 reviews)
Fabulous Free breakfast!...close to zoo, Sea world, museums, malls!... excellent customer service! - 

$64

$64
Loews Coronado Bay Resort

Loews Coronado Bay Resort

4000 Coronado Bay Rd, Coronado
4.0 out of 5.0
4.3 out of 5 (2,142 reviews)
Relaxing atmosphere The resort is undergoing renovations so a complimentary use of the resort was offered to my benefit … - 

$188

$188
Harborview Inn & Suites San Diego Harbor

Harborview Inn & Suites San Diego Harbor

550 West Grape St, San Diego
2.0 out of 5.0
2.8 out of 5 (770 reviews)
Nice hotel that's close to the bay. Hotel is in construction, didn't care for early morning noise from working crew. Hotel room was cle … - 

$60

$60
La Quinta Inn & Suites Carlsbad - Legoland Area

La Quinta Inn & Suites Carlsbad - Legoland Area

760 Macadamia Dr, Carlsbad
2.5 out of 5.0
3.9 out of 5 (788 reviews)
Very conveinent to intetstate. Dissappointed: rented 2 rooms which I thought would be close. Actually in seperate buildings. Puzzl … - 

$89

$89
Consulate Hotel Airport/Sea World San Diego Area

Consulate Hotel Airport/Sea World San Diego Area

2901 Nimitz Blvd, San Diego
2.0 out of 5.0
2.6 out of 5 (376 reviews)
Not to Bad for the price... Although the AC said it was at 60 it wasn't blowing out 60. It was SD so I didn't really need to co … - 

$58

$58
Catamaran Resort and Spa

Catamaran Resort and Spa

3999 Mission Boulevard, San Diego
4.0 out of 5.0
4.2 out of 5 (1,575 reviews)
Great location Very nice place to spend your vacation. Great views and within walking distance to the beach. - 

$129

$129
Hyatt Place San Diego/Vista-Carlsbad

Hyatt Place San Diego/Vista-Carlsbad

2645 South Melrose Drive, Vista
3.0 out of 5.0
4.5 out of 5 (669 reviews)
Room walls very dirty. My only complaint is about walls need to be cleaned or painted. Very disgustting, specially with yo … - 

$129

$129
The Atwood

The Atwood

1201 Hotel Circle South, San Diego
3.0 out of 5.0
3.7 out of 5 (301 reviews)
Convenient to downtown We stayed on a Friday night as part of weekend food and music trip to downtown San Diego. The locat … - 

$67

$67
Motel 6 San Diego - Hotel Circle - Mission Valley

Motel 6 San Diego - Hotel Circle - Mission Valley

2424 Hotel Circle North, San Diego
2.0 out of 5.0
3.1 out of 5 (333 reviews)
No comforters very tiny rooms and ok cleaning, not excellent. But staff were friendly and answered … - 

$60

$60
Bahia Resort Hotel

Bahia Resort Hotel

998 W Mission Bay Dr, San Diego
3.5 out of 5.0
4.1 out of 5 (1,851 reviews)
Mission beach vacation Hotel is nice just older great location! Close to the zoo and old San Diego restaraunts. - 

$129

$129
The Lafayette Hotel, Swim Club & Bungalows

The Lafayette Hotel, Swim Club & Bungalows

2223 El Cajon Blvd, San Diego
3.5 out of 5.0
3.9 out of 5 (752 reviews)
Nice hotel with swimming pool Great stay. Just 1 recommendation for other travellers. Check where you room will be located! I ask … - 

$129

$129
Map

Recently booked San Diego County hotels

Manchester Grand Hyatt San Diego
4.0 out of 5.0
Last booking: 12 minutes ago
The Sofia Hotel
3.5 out of 5.0
Last booking: 1 hour ago
Comfort Inn & Suites San Diego - Zoo SeaWorld Area
2.5 out of 5.0
Last booking: 1 hour ago
Ramada Gaslamp Convention Center-The Historic St James Hotel
3.0 out of 5.0
Last booking: 2 hours ago
Extended Stay America San Diego - Oceanside
2.5 out of 5.0
Last booking: 2 hours ago
Inn By The Sea La Jolla
2.5 out of 5.0
Last booking: 2 hours ago
The Pearl Hotel
3.0 out of 5.0
Last booking: 2 hours ago
Les Artistes Inn
2.5 out of 5.0
Last booking: 2 hours ago
Hampton Inn San Diego Downtown
2.5 out of 5.0
Last booking: 2 hours ago

Independent San Diego County Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Diego County, California. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Diego County hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Diego County Independent locations may even offer extra little benefits and discounts for frequent travelers.