Beginning of main content

San Diego County Hotel Rooms at the Independent

Search Flights

Trip Type
Flight 1
Flight 2
Flight 3
Flight 4
Flight 5

San Diego County Hotels

Search Flight + Hotel

Search 321,000 hotels worldwide.

Get the price guarantee available for your trip.

No Expedia cancellation fee to change or cancel almost any hotel reservation.


Featured San Diego County Independent Hotels

See all 863 Hotels in San Diego County
Estancia La Jolla Hotel & Spa

Estancia La Jolla Hotel & Spa

9700 N Torrey Pines Road, La Jolla
4.0 out of 5.0
4.4 out of 5 (416 reviews)
Wonderful escape The grounds are beautiful, staff is very friendly and helpful, the rooms are clean and comfortable, … - 

$199

$199
Santaluz Hillside Estate

Santaluz Hillside Estate

8170 Caminito Santaluz Sur, San Diego
4.5 out of 5.0

$3,105

$3,105
The Lodge at Torrey Pines

The Lodge at Torrey Pines

11480 N Torrey Pines Rd, La Jolla
5.0 out of 5.0
4.7 out of 5 (210 reviews)
Nice hotel by ocean This is one of the best hotel ive stayed in San Diego. The staff our very professional and has wond … - 

$349

$349
Westgate Hotel

Westgate Hotel

1055 Second Ave, San Diego
4.0 out of 5.0
4.5 out of 5 (817 reviews)
Nice hotel downtown with easy access. Easy to get to and out of. Staff was great and hotel is beautiful (very Victorian type theme). I di … - 

$179

$179
Tower23 Hotel

Tower23 Hotel

723 Felspar St, San Diego
4.0 out of 5.0
4.6 out of 5 (269 reviews)
Nice hotel- great location- would stay again, rooms clean and comfortable - 

$379

$379
Grande Colonial Hotel

Grande Colonial Hotel

910 Prospect St, La Jolla
4.0 out of 5.0
4.5 out of 5 (329 reviews)
Super clean, excellent people at the desk, and great restaurant. We will definitely stay here again … - 

$229

$229
San Diego Heart of Gas Lamp District

San Diego Heart of Gas Lamp District

Island Ave. & 15th St., San Diego
4.5 out of 5.0
3.9 out of 5 (11 reviews)
Nice on the inside. Homeless on the outside. This is located in the homeless district. Scary to walk anywhere. Lyfted every time. Inside was ver … - 
La Casa Del Zorro

La Casa Del Zorro

3845 Yaqui Pass Rd, Borrego Springs
4.0 out of 5.0
4.6 out of 5 (148 reviews)
Overnight getaway The resort was pleasant with lovely rooms, quaint public spaces and an interesting history. Prices … - 

$99

$99
Lakehouse Hotel and Resort

Lakehouse Hotel and Resort

1025 La Bonita Drive, San Marcos
4.0 out of 5.0
4.6 out of 5 (615 reviews)
Excellent Boutique Hotel We enjoyed everything about the hotel. Kid friendly and plenty of exploration on the lake. Food at … - 

$199

$199
Viejas Casino & Resort

Viejas Casino & Resort

5000 Willows Road, Alpine
4.0 out of 5.0
4.6 out of 5 (204 reviews)
great experience. clean fun and nice. price little high. casino clean - 

$150

$150
Map

Recently booked San Diego County hotels

San Diego Marriott Marquis & Marina
4.0 out of 5.0
Last booking: 1 minute ago
California Suites Hotel
2.0 out of 5.0
Last booking: 6 minutes ago
Hampton Inn San Diego Downtown
2.5 out of 5.0
Last booking: 7 minutes ago
Loews Coronado Bay Resort
4.0 out of 5.0
Last booking: 8 minutes ago
Valley Motel El Cajon
2.0 out of 5.0
Last booking: 9 minutes ago
Courtyard by Marriott San Diego Central
3.0 out of 5.0
Last booking: 10 minutes ago
HYATT house San Diego/Sorrento Mesa
3.0 out of 5.0
Last booking: 12 minutes ago
Residence Inn by Marriott San Diego North San Marcos
3.0 out of 5.0
Last booking: 14 minutes ago
Best Western Courtesy Inn
2.5 out of 5.0
Last booking: 15 minutes ago

Independent San Diego County Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Diego County, California. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Diego County hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Diego County Independent locations may even offer extra little benefits and discounts for frequent travelers.