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Featured San Francisco Bay Boutique Hotels

See all 1,220 Hotels in San Francisco Bay
Hotel Zephyr

Hotel Zephyr

250 Beach Street, San Francisco
3.5 out of 5.0
4.1 out of 5 (916 reviews)
Excellent location for Fisherman's Wharf area of the city.
  Oct 22, 2017

$169

$169
Argonaut Hotel - a Noble House Hotel

Argonaut Hotel - a Noble House Hotel

495 Jefferson St, San Francisco
4.5 out of 5.0
4.6 out of 5 (2,972 reviews)
Nice hotel close to attractions.Arrived early but was allowed to check in. Great staff, very helpful.
  Oct 22, 2017

$202

$202
Harbor Court Hotel

Harbor Court Hotel

165 Steuart St, San Francisco
3.5 out of 5.0
4.2 out of 5 (568 reviews)
Historic Feel and Great LocationHad the opportunity to spend the weekend at this hotel. The overall appearance and design gives a nice historical feel to the stay. The room was very comfortable and did not experience any problems with rest throughout the night. The location was incredible. The view from the bay side of the entrance ...
  Oct 21, 2017

$209

$209
Cavallo Point

Cavallo Point

601 Murray Circle, Sausalito
4.5 out of 5.0
4.4 out of 5 (126 reviews)
Relaxing bachelorette weekend!We booked a two bedroom historic loft suite for my sister's bachelorette party with her girlfriends. We had an amazing weekend there. The views were so beautiful and peaceful. The spa facility was amazing!! The accommodation itself for a group gathering was great except there were LOTS of stairs ...
  Oct 6, 2017

$459

$459
Fairmont Heritage Place, Ghirardelli Square

Fairmont Heritage Place, Ghirardelli Square

900 N Point Street, San Francisco
5.0 out of 5.0
4.7 out of 5 (86 reviews)
Beautiful Hotel, great location, fantastic staffWe had a great stay. The unit and ammenities were perfect for our family. We stayed for 4 nights and 4 days. The location was amazing and was close to a ton of food etc. There was a small issue with the fire alarm going off in the morning. We casually mentioned that it was an inconvenience to the ...
  Oct 3, 2017

$524

$524
Pier 2620 Hotel Fisherman's Wharf

Pier 2620 Hotel Fisherman's Wharf

2620 Jones Street, San Francisco
3.5 out of 5.0
4.2 out of 5 (1,963 reviews)
Great hotel, friendly staff and good breakfastEverything about this hotel met our expectations - helpful and friendly staff, nice room, close to Fishermans wharf but quiet location. Breakfast was nice but not a huge selection.
  Oct 21, 2017

$178

$178
Hotel Zoe San Francisco

Hotel Zoe San Francisco

425 North Point, San Francisco
4.0 out of 5.0
4.2 out of 5 (2,382 reviews)
Beautiful room. The most comfortable bed of the whole trip. Pretty close to the pier. Parking was very expensive.
  Oct 21, 2017

$209

$209
The Gables Inn - Sausalito

The Gables Inn - Sausalito

62 Princess Street, Sausalito
3.0 out of 5.0
4.5 out of 5 (186 reviews)
Fabulous peaceful hotelWe chose not to stay in Central San Francisco as Sausalito was recommended by a friend. So glad we took the advice, although busy during the day by 5.00pm a calmness envelopes Sausalito and you can reflect on your day in a tranquil & beautiful setting!
  Oct 19, 2017

$225

$225
Hilton San Francisco Airport Bayfront

Hilton San Francisco Airport Bayfront

600 Airport Blvd, Burlingame
4.0 out of 5.0
4.1 out of 5 (1,083 reviews)
Nice and clean. Nice view. Parking lot is clean and safe
  Oct 22, 2017

$111

$111
Aloft San Francisco Airport

Aloft San Francisco Airport

401 E Millbrae Ave, Millbrae
3.0 out of 5.0
4.2 out of 5 (489 reviews)
Perfect stop to catch an early flightWe stayed here just one night of our 5 night trip to SF and The Napa area. The hotel is very convenient for an early flight out of SFO. They have a shuttle van that runs to the airport every half hour. Their sister hotel, The Westin, is right across the parking lot and has a decent restaurant. The ...
  Oct 14, 2017

$139

$139
The Lodge at Tiburon

The Lodge at Tiburon

1651 Tiburon Blvd, Tiburon
3.5 out of 5.0
4.1 out of 5 (540 reviews)
Evacuation StayWe were at the hotel with our two greyhounds while under evacuation from the wild fires. The staff could not have been kinder or more helpful. In fact, the hotel was also housing some of the First Responders and it was great that we all had a base so close to a grocery store, drug store and laundry ...
  Oct 22, 2017

$178

$178
Bay Landing San Francisco Airport Hotel

Bay Landing San Francisco Airport Hotel

1550 Bayshore Hwy, Burlingame
3.0 out of 5.0
4.5 out of 5 (2,160 reviews)
Clean and quiet next to the airportWe just needed a hotel for one night near the airport to fly home the next day. I would give this hotel 5 stars except check in was an issue and they charge $100 for incidentals. Other than that, the hotel was clean, quiet and comfortable with a good breakfast.
  Oct 21, 2017

$125

$125
DoubleTree by Hilton Hotel San Francisco Airport North

DoubleTree by Hilton Hotel San Francisco Airport North

5000 Sierra Point Pkwy, Brisbane
3.5 out of 5.0
4.2 out of 5 (1,459 reviews)
nice size and clean roomclean and good decor, beautiful nature for morning walk.
  Oct 23, 2017

$169

$169
Holiday Inn Express Mill Valley San Francisco Area

Holiday Inn Express Mill Valley San Francisco Area

160 Shoreline Hwy, Mill Valley
3.0 out of 5.0
4.1 out of 5 (376 reviews)
Great place, close to the beach too. Xxxxxxxxxxxxxxxxxxxxxxxxx
  Sep 25, 2017

$176

$176
Casa Madrona Hotel & Spa

Casa Madrona Hotel & Spa

801 Bridgeway, Sausalito
4.0 out of 5.0
4.3 out of 5 (203 reviews)
Nice view of the harbor. Big enough bathroomWe got the harbor view with balcony. Everything is nice and modern. Big bathroom with oversized tub. Only thing is street noise as our room faced the street. Staffs are nice. Good location. Overall, we will def Comeback.
  Oct 10, 2017

$319

$319
Sheraton Fisherman's Wharf Hotel

Sheraton Fisherman's Wharf Hotel

2500 Mason St, San Francisco
4.0 out of 5.0
3.9 out of 5 (2,454 reviews)
Great Hotel close to all sightseeing highlights.Fantastic stay, loved sitting by fire pits with a glass of wine after a long day sightseeing.
  Oct 19, 2017

$189

$189
Hotel Griffon - A Greystone Hotel

Hotel Griffon - A Greystone Hotel

155 Steuart St, San Francisco
3.5 out of 5.0
4.1 out of 5 (125 reviews)
Lovely, boutique hotel in convenient locationHotel is quaint and well located along the water looking at the Bay Bridge. The ability to use the YMCA which is 2 doors away for free to work out is great.
  Sep 22, 2017

$179

$179
Hyatt Centric Fisherman's Wharf San Francisco

Hyatt Centric Fisherman's Wharf San Francisco

555 N Point St, San Francisco
4.0 out of 5.0
4.2 out of 5 (1,596 reviews)
Great location. Great hotel.Second stay in two years. Impressed both Tim’s by the conditions of the facilities and friendliness of staff. Will stay there again next time.
  Oct 18, 2017

$199

$199
Map

Recently booked Boutique Hotels in San Francisco Bay

Hilton San Francisco Airport Bayfront
4.0 out of 5.0
Last booking: 6 minutes ago
The Lodge at Tiburon
3.5 out of 5.0
Last booking: 18 minutes ago
The Westin San Francisco Airport
4.0 out of 5.0
Last booking: 23 minutes ago
The Tuscan, A Noble House Hotel
4.0 out of 5.0
Last booking: 24 minutes ago
Americas Best Value Inn San Mateo/San Francisco
2.0 out of 5.0
Last booking: 34 minutes ago
The Marina Inn on San Francisco Bay
2.5 out of 5.0
Last booking: 42 minutes ago
Coral Reef Inn & Suites
2.5 out of 5.0
Last booking: 47 minutes ago
Best Western Plus Coyote Point Inn
2.5 out of 5.0
Last booking: 57 minutes ago
Holiday Inn & Suites San Mateo
3.0 out of 5.0
Last booking: 1 hour ago

Reserve a San Francisco Bay Boutique Hotel that is Uniquely You

Wherever you may travel, you are still bringing your one of a kind self on your trip, and Expedia provides deals at some of the most authentic boutique accommodations in the trendiest parts of town. Landing in San Francisco Bay and discover that all your worries are left behind, you can relax for the next few days. You'll discover that a multitude people had the same holiday idea as you. San Francisco Bay has seen a 67% increase over last year. With all there is to do in San Francisco Bay it remains a popular destination to vacation.

Small Property with Immense Personality

These distinctive hotels instill some of the essence and vibe of San Francisco Bay into your room, making your stay more personal. Moreover, you'll love coming back from an exciting day of touring San Francisco Bay and relaxing in a room that boasts charming touches and fabulous murals. Most boutique hotels have traits like:

  • An idiosyncratic style that you will not be able to get in more sizable hotels, from individually crafted rooms to intimate cafes, and conveniences that make it feel extremely comfortable.
  • An exclusive stay, since boutique hotels in general have less than a hundred rooms.
  • A highly personalized type of service, where the staff will know you before you even check in.
  • A prime address in the center of the city. You'll be just steps from the city's most talked about attractions.

Indulge in Everything San Francisco Bay Offers!

San Francisco Bay has rooms to appeal to all types of budgets and preferences that make your visit unforgettable.

Stay in Style While in San Francisco Bay

From hotels that spare little expense to others that are frugal yet fashionable, you are sure to find an accommodation that is tailor-made for you. Your San Francisco Bay boutique hotel is only a couple taps away. Expedia makes it effortless to pick your preferred place to stay when you vacation in San Francisco Bay.