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Featured San Francisco Bay Boutique Hotels

See all 1,213 Hotels in San Francisco Bay
Hotel Zephyr

Hotel Zephyr

250 Beach Street, San Francisco
3.5 out of 5.0
4.1 out of 5 (909 reviews)
LOVED THE LOCATION AND DECOR, SERVICEloved the location, staff good, decor was very interesting and appealing, would stay there again, close to beach and other attractions
  Oct 18, 2017

$169

$169
Argonaut Hotel - a Noble House Hotel

Argonaut Hotel - a Noble House Hotel

495 Jefferson St, San Francisco
4.5 out of 5.0
4.6 out of 5 (2,966 reviews)
Close location to trolley, great restaurants nearby and in hotel.
  Oct 18, 2017

$255

$255
Harbor Court Hotel

Harbor Court Hotel

165 Steuart St, San Francisco
3.5 out of 5.0
4.2 out of 5 (567 reviews)
Great locationI love this hotel... great location to the ball park, restaurants, ferry building and more!
  Oct 16, 2017

$209

$209
Cavallo Point

Cavallo Point

601 Murray Circle, Sausalito
4.5 out of 5.0
4.4 out of 5 (126 reviews)
Relaxing bachelorette weekend!We booked a two bedroom historic loft suite for my sister's bachelorette party with her girlfriends. We had an amazing weekend there. The views were so beautiful and peaceful. The spa facility was amazing!! The accommodation itself for a group gathering was great except there were LOTS of stairs ...
  Oct 6, 2017

$459

$459
Fairmont Heritage Place, Ghirardelli Square

Fairmont Heritage Place, Ghirardelli Square

900 N Point Street, San Francisco
5.0 out of 5.0
4.7 out of 5 (86 reviews)
Beautiful Hotel, great location, fantastic staffWe had a great stay. The unit and ammenities were perfect for our family. We stayed for 4 nights and 4 days. The location was amazing and was close to a ton of food etc. There was a small issue with the fire alarm going off in the morning. We casually mentioned that it was an inconvenience to the ...
  Oct 3, 2017

$524

$524
Pier 2620 Hotel Fisherman's Wharf

Pier 2620 Hotel Fisherman's Wharf

2620 Jones Street, San Francisco
3.5 out of 5.0
4.2 out of 5 (1,956 reviews)
SF Fisherman’s WarfGreat location, clean, friendly staff. Outstanding breakfast. We will be back
  Oct 18, 2017

$178

$178
Hotel Zoe San Francisco

Hotel Zoe San Francisco

425 North Point, San Francisco
4.0 out of 5.0
4.2 out of 5 (2,376 reviews)
Hotel Zoe was very conveniently located in the Wharf area and the staff was awesome and accommodating. Room was clean and updated. Would definitely stay there again!
  Oct 17, 2017

$209

$209
The Gables Inn - Sausalito

The Gables Inn - Sausalito

62 Princess Street, Sausalito
3.0 out of 5.0
4.5 out of 5 (185 reviews)
Historic Hotel in the Heart of SausalitoGreat room, with lots of room, we had an outdoor patio and a sitting area. Room was well appointed and clean. Staff was very friendly and helpful. Breakfast was included and had lots of variety with lots of fresh fruit, pastries and juices, great coffee and bagels. Park was available for a fee at ...
  Oct 14, 2017

$225

$225
Hilton San Francisco Airport Bayfront

Hilton San Francisco Airport Bayfront

600 Airport Blvd, Burlingame
4.0 out of 5.0
4.1 out of 5 (1,081 reviews)
Great hotel for a good price, recommend to travelers who drive
  Oct 16, 2017

$111

$111
Aloft San Francisco Airport

Aloft San Francisco Airport

401 E Millbrae Ave, Millbrae
3.0 out of 5.0
4.2 out of 5 (489 reviews)
Perfect stop to catch an early flightWe stayed here just one night of our 5 night trip to SF and The Napa area. The hotel is very convenient for an early flight out of SFO. They have a shuttle van that runs to the airport every half hour. Their sister hotel, The Westin, is right across the parking lot and has a decent restaurant. The ...
  Oct 14, 2017

$139

$139
The Lodge at Tiburon

The Lodge at Tiburon

1651 Tiburon Blvd, Tiburon
3.5 out of 5.0
4.1 out of 5 (539 reviews)
hotel was nice, but the restaurant was terrible..... Service was terrible and prices were to high for the quality.....
  Oct 12, 2017

$220

$220
Bay Landing San Francisco Airport Hotel

Bay Landing San Francisco Airport Hotel

1550 Bayshore Hwy, Burlingame
3.0 out of 5.0
4.5 out of 5 (2,155 reviews)
Amazing Hotel on the bayI was blown away with my stay from start to finish. Debra at the front desk greeted me warmly and treated me like a VIP despite my comfy travel attire appearance. Room was lovely, bed extremely comfortable, view and location stunning! Clean, quiet, wonderful continental breakfast with upgraded touches. ...
  Oct 17, 2017

$125

$125
DoubleTree by Hilton Hotel San Francisco Airport North

DoubleTree by Hilton Hotel San Francisco Airport North

5000 Sierra Point Pkwy, Brisbane
3.5 out of 5.0
4.2 out of 5 (1,457 reviews)
FuneralWe came to town for a funeral and the room was so nice I felt I was on vacation.
  Oct 6, 2017

$169

$169
Holiday Inn Express Mill Valley San Francisco Area

Holiday Inn Express Mill Valley San Francisco Area

160 Shoreline Hwy, Mill Valley
3.0 out of 5.0
4.1 out of 5 (376 reviews)
Great place, close to the beach too. Xxxxxxxxxxxxxxxxxxxxxxxxx
  Sep 25, 2017

$176

$176
Casa Madrona Hotel & Spa

Casa Madrona Hotel & Spa

801 Bridgeway, Sausalito
4.0 out of 5.0
4.3 out of 5 (203 reviews)
Nice view of the harbor. Big enough bathroomWe got the harbor view with balcony. Everything is nice and modern. Big bathroom with oversized tub. Only thing is street noise as our room faced the street. Staffs are nice. Good location. Overall, we will def Comeback.
  Oct 10, 2017

$382

$382
Sheraton Fisherman's Wharf Hotel

Sheraton Fisherman's Wharf Hotel

2500 Mason St, San Francisco
4.0 out of 5.0
3.9 out of 5 (2,452 reviews)
Great location As mentioned on previous reviews disappointing that you have to pay to have Wi-Fi in your room . You can get free WiFi in the lobby .
  Oct 17, 2017

$189

$189
Hotel Griffon - A Greystone Hotel

Hotel Griffon - A Greystone Hotel

155 Steuart St, San Francisco
3.5 out of 5.0
4.1 out of 5 (125 reviews)
Lovely, boutique hotel in convenient locationHotel is quaint and well located along the water looking at the Bay Bridge. The ability to use the YMCA which is 2 doors away for free to work out is great.
  Sep 22, 2017

$179

$179
Hyatt Centric Fisherman's Wharf San Francisco

Hyatt Centric Fisherman's Wharf San Francisco

555 N Point St, San Francisco
4.0 out of 5.0
4.2 out of 5 (1,596 reviews)
Great location. Great hotel.Second stay in two years. Impressed both Tim’s by the conditions of the facilities and friendliness of staff. Will stay there again next time.
  Oct 18, 2017

$264

$264
Map

Recently booked Boutique Hotels in San Francisco Bay

Hampton Inn & Suites San Francisco Airport South-Burlingame
2.5 out of 5.0
Last booking: 7 minutes ago
Aloft San Francisco Airport
3.0 out of 5.0
Last booking: 8 minutes ago
Hyatt Regency San Francisco Airport
4.0 out of 5.0
Last booking: 19 minutes ago
Holiday Inn San Francisco-Fisherman's Wharf
3.5 out of 5.0
Last booking: 21 minutes ago
DoubleTree by Hilton Hotel San Francisco Airport North
3.5 out of 5.0
Last booking: 21 minutes ago
Hilton San Francisco Airport Bayfront
4.0 out of 5.0
Last booking: 22 minutes ago
Best Western Plus Coyote Point Inn
2.5 out of 5.0
Last booking: 29 minutes ago
Bay Landing San Francisco Airport Hotel
3.0 out of 5.0
Last booking: 33 minutes ago
Hyatt Centric Fisherman's Wharf San Francisco
4.0 out of 5.0
Last booking: 37 minutes ago

Reserve a San Francisco Bay Boutique Hotel that is Uniquely You

Wherever you may travel, you are still bringing your one of a kind self on your trip, and Expedia provides deals at some of the most authentic boutique accommodations in the trendiest parts of town. Landing in San Francisco Bay and discover that all your worries are left behind, you can relax for the next few days. You'll discover that a multitude people had the same holiday idea as you. San Francisco Bay has seen a 67% increase over last year. With all there is to do in San Francisco Bay it remains a popular destination to vacation.

Small Property with Immense Personality

These distinctive hotels instill some of the essence and vibe of San Francisco Bay into your room, making your stay more personal. Moreover, you'll love coming back from an exciting day of touring San Francisco Bay and relaxing in a room that boasts charming touches and fabulous murals. Most boutique hotels have traits like:

  • An idiosyncratic style that you will not be able to get in more sizable hotels, from individually crafted rooms to intimate cafes, and conveniences that make it feel extremely comfortable.
  • An exclusive stay, since boutique hotels in general have less than a hundred rooms.
  • A highly personalized type of service, where the staff will know you before you even check in.
  • A prime address in the center of the city. You'll be just steps from the city's most talked about attractions.

Indulge in Everything San Francisco Bay Offers!

San Francisco Bay has rooms to appeal to all types of budgets and preferences that make your visit unforgettable.

Stay in Style While in San Francisco Bay

From hotels that spare little expense to others that are frugal yet fashionable, you are sure to find an accommodation that is tailor-made for you. Your San Francisco Bay boutique hotel is only a couple taps away. Expedia makes it effortless to pick your preferred place to stay when you vacation in San Francisco Bay.