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Featured San Juan Islands Independent Hotels

See all 393 Hotels in San Juan Islands
GuestHouse Inn Bellingham

GuestHouse Inn Bellingham

805 Lakeway Drive, Bellingham
2.5 out of 5.0
3.7 out of 5 (477 reviews)
Nice Hotel, easy to find Rooms nice, breakfast was fine, location great, staff great. - 

$63

$63
Harbour Towers Hotel & Suites

Harbour Towers Hotel & Suites

345 Quebec St, Victoria
3.0 out of 5.0
3.9 out of 5 (1,332 reviews)
Nice hotel with wonderful views We had an ocean view suite on the 9th floor and I heartily recommend paying a bit more to get the v … - 

$111

$111
Hotel Grand Pacific

Hotel Grand Pacific

463 Belleville St, Victoria
4.0 out of 5.0
4.5 out of 5 (1,511 reviews)
Great hotel in Centre of Victoria We enjoyed our stay here. The hotel was quiet and clean. It had been recently updated with very com … - 

$135

$135
Chateau Victoria Hotel and Suites

Chateau Victoria Hotel and Suites

740 Burdett Ave, Victoria
3.5 out of 5.0
4.3 out of 5 (628 reviews)
Lovely hotel close to everything in Victoria Lovely upscale hotel and great value. Easy walking distance to waterfront, shopping, BC Museum and … - 

$119

$119
Capital CityCenter Hotel

Capital CityCenter Hotel

1961 Douglas St, Victoria
3.0 out of 5.0
3.8 out of 5 (697 reviews)
Spacious, modern, clean, great semi private patio. More than pleasantly surprised with quality of the room for a great price. - 

$72

$72
The Oswego Hotel

The Oswego Hotel

500 Oswego Street, Victoria
4.0 out of 5.0
4.6 out of 5 (1,010 reviews)
Great location Close to all tourist attractions and waterfront Hotel was clean - 

$125

$125
Bedford Regency Hotel

Bedford Regency Hotel

1140 Government St, Victoria
2.5 out of 5.0
3.7 out of 5 (666 reviews)
Great location! Overall, this hotel was nice. The hotel staff were efficient and friendly. Any requests I made were … - 

$66

$66
Silver Reef Hotel Casino Spa

Silver Reef Hotel Casino Spa

4876 Haxton Way, Ferndale
3.5 out of 5.0
4.2 out of 5 (80 reviews)
Good casino Not crazy buisy. Good time great resteraunts. Good return on the slots. - 

$101

$101
Four Points by Sheraton Bellingham Hotel & Conference Center

Four Points by Sheraton Bellingham Hotel & Conference Center

714 Lakeway Dr, Bellingham
3.0 out of 5.0
3.9 out of 5 (291 reviews)
Solid Hotel I stayed one night here with my girlfriend. The check in was fast and easy and the front desk staff … - 

$116

$116
Coast Victoria Hotel & Marina by APA

Coast Victoria Hotel & Marina by APA

146 Kingston St, Victoria
3.5 out of 5.0
4.3 out of 5 (750 reviews)
Great location. Hotel right on Harbour walk. We stayed six nights. Loved the location! Easy to walk downtown. Many things to do. - 

$111

$111
Hotel Zed

Hotel Zed

3110 Douglas St, Victoria
3.0 out of 5.0
4.0 out of 5 (429 reviews)
Nice colorful hotel Very colorful experience, feeling back in the 80s ... - 

$69

$69
Embassy Inn

Embassy Inn

520 Menzies St, Victoria
3.0 out of 5.0
4.2 out of 5 (729 reviews)
Great location for the inner harbour area Great location for the inner harbor area. You can stay late and shoot the mid autumn moon with the … - 

$103

$103
Delta Hotels by Marriott Victoria Ocean Pointe Resort

Delta Hotels by Marriott Victoria Ocean Pointe Resort

100 Harbour Road, Victoria
4.0 out of 5.0
4.6 out of 5 (688 reviews)
staff friendly and very eager to assist us Stay was excellent staff helpful view from our room was as expected - 

$121

$121
The Magnolia Hotel and Spa

The Magnolia Hotel and Spa

623 Courtney St, Victoria
4.5 out of 5.0
4.8 out of 5 (765 reviews)
Memorable Stay My daughter and I stayed at the Magnolia Hotel & Spa while on a trip to celebrate her 16th birthday … - 

$185

$185
The Parkside Hotel & Spa

The Parkside Hotel & Spa

810 Humboldt Street, Victoria
3.5 out of 5.0
4.5 out of 5 (868 reviews)
This hotel was very high end. The suite was beautiful and the staff were excellent. Plumbing made a … - 

$127

$127
The Fairmont Empress

The Fairmont Empress

721 Government St, Victoria
4.0 out of 5.0
4.2 out of 5 (704 reviews)
Made the difference This hotel was a fantastic experience for me and my family. They attended to every need and made su … - 

$224

$224
Arbutus Inn

Arbutus Inn

2898 Douglas St, Victoria
2.0 out of 5.0
3.3 out of 5 (282 reviews)
Great location! We found the location satisfactory because it provided us access to shops, restaurants, but most im … - 

$63

$63
La Quinta Inn & Suites Bellingham

La Quinta Inn & Suites Bellingham

1063 W. Bakerview Road, Bellingham
2.5 out of 5.0
4.6 out of 5 (190 reviews)
Great place and location. Will look at other La Quinta Inns at other location I stay. - 

$89

$89
Hotel Rialto

Hotel Rialto

653 Pandora Ave., Victoria
3.5 out of 5.0
4.5 out of 5 (772 reviews)
Nice, centrally located hotel. We enjoyed our stay at Hotel Rialto. It’s a nice, central location and is walking distance to shopp … - 

$127

$127
Strathcona Hotel

Strathcona Hotel

919 Douglas Street, Victoria
2.5 out of 5.0
3.6 out of 5 (307 reviews)
Central city location Girlfriend enjoyed her stay so im happy! Lots of intresting venues at hotel and close to restaurant … - 

$65

$65
Map

Recently booked San Juan Islands hotels

Friday Harbor Suites
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Independent San Juan Islands Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Juan Islands, Washington. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Juan Islands hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Juan Islands Independent locations may even offer extra little benefits and discounts for frequent travelers.