Title: The Best Houseboat Rentals in San Rafael | Expedia.com [San Rafael Travel Guide](https://expedia.com/San-Rafael.dx9924)[Hotels in San Rafael](https://expedia.com/San-Rafael-Hotels.d9924.Travel-Guide-Hotels)[Vacation Rentals in San Rafael](https://expedia.com/San-Rafael-Vacation-Rentals.d9924.Travel-Guide-VacationRentals)[Flights to San Rafael](https://expedia.com/Cheap-Flights-To-San-Rafael.d9924.Travel-Guide-Flights)[Things to do in San Rafael](https://expedia.com/Things-To-Do-In-San-Rafael.d9924.Travel-Guide-Activities)[Car Rentals in San Rafael](https://expedia.com/Car-Rentals-In-San-Rafael.d9924.Car-Rental-Guide)[San Rafael Vacation Packages](https://expedia.com/San-Rafael.d9924.Destination-Travel-Guides) ![Mission San Rafael Arc?ngel was founded on December 14, 1817 as a medical asistencia ("sub-mission") of the Mission San Francisco de As](https://images.trvl-media.com/place/9924/d2aaecde-6518-4b92-b416-4522be60b44f.jpg?impolicy=fcrop&w=1200&h=500&q=medium) ![](https://images.trvl-media.com/place/9924/d2aaecde-6518-4b92-b416-4522be60b44f.jpg?impolicy=fcrop&w=1200&h=500&q=medium) ## Check prices for these dates In two weeks [Mar 13 - Mar 15](https://www.expedia.com/Hotel-Search?regionId=9924&startDate=2026-03-13&endDate=2026-03-15&adults=2&categorySearch=vacation_rentals_option&stay_options_group=vacation_rentals_option&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) In two months [Apr 24 - Apr 26](https://www.expedia.com/Hotel-Search?regionId=9924&startDate=2026-04-24&endDate=2026-04-26&adults=2&categorySearch=vacation_rentals_option&stay_options_group=vacation_rentals_option&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) In three months [May 22 - May 24](https://www.expedia.com/Hotel-Search?regionId=9924&startDate=2026-05-22&endDate=2026-05-24&adults=2&categorySearch=vacation_rentals_option&stay_options_group=vacation_rentals_option&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) In four months [Jun 19 - Jun 21](https://www.expedia.com/Hotel-Search?regionId=9924&startDate=2026-06-19&endDate=2026-06-21&adults=2&categorySearch=vacation_rentals_option&stay_options_group=vacation_rentals_option&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) ## Our top choices for San Rafael houseboats ![Marina](https://images.trvl-media.com/lodging/124000000/123720000/123717100/123717018/w1205h1228x0y3-325d575a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Interior](https://images.trvl-media.com/lodging/124000000/123720000/123717100/123717018/952686f2.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Interior](https://images.trvl-media.com/lodging/124000000/123720000/123717100/123717018/60960d3d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![1 bedroom, free WiFi, bed sheets](https://images.trvl-media.com/lodging/124000000/123720000/123717100/123717018/f2d6ca1c.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Houseboat in Alameda [](https://www.expedia.com/Oakland-Hotels-Come-Live-The-Dream-Enjoy-A-Romantic-Stay-On-A-Luxury-Appointed-Yacht.h123717018.Hotel-Information) 10/10 Exceptional (2 reviews) "My kids and I had a special, cozy night aboard this lovely yacht. We had a fun day in Alameda and it was great to surprise them with a sleepover on a boat instead of a hotel. It felt magical to watch sunset and to see the stars from the marina. We enjoyed a great breakfast at Mosley’s cafe. Thank you for a unique floating night together!" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Karen R. $191 nightly $191 total Feb 26 - Feb 27 Total with taxes and fees [](https://www.expedia.com/Oakland-Hotels-Come-Live-The-Dream-Enjoy-A-Romantic-Stay-On-A-Luxury-Appointed-Yacht.h123717018.Hotel-Information) Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply. [View all properties](https://expedia.com/Hotel-Search?startDate=2026-03-11&endDate=2026-03-12®ionId=9924&adults=2&categorySearch=vacation_rentals_option&stay_options_group=vacation_rentals_option&openPlayBack=true) ![](https://forever.travel-assets.com/flex/flexmanager/images/2026/02/06/expedia-sale-2026-desktop-us-ca.jpg?impolicy=fcrop&w=1400&h=600&q=mediumHigh) ## The Annual Vacation Sale Members save up to 40% on hotels and homes. Plan this year’s big trip and save. [Book now](https://expedia.com/deals?rfrr=AA_SPRING_PROMO_9924) ## Find vacation rentals that suit your style Private vacation homes [](https://www.expedia.com/Hotel-Search?destination=San+Rafael%2C+California%2C+United+States+of+America®ionId=9924&latLong=37.973534%2C-122.53109&adults=2&startDate=2026-05-26&d1=2026-05-26&endDate=2026-05-29&d2=2026-05-29&lodging=VACATION_HOME) Cottages [](https://www.expedia.com/Hotel-Search?destination=San+Rafael%2C+California%2C+United+States+of+America®ionId=9924&latLong=37.973534%2C-122.53109&adults=2&startDate=2026-05-26&d1=2026-05-26&endDate=2026-05-29&d2=2026-05-29&lodging=COTTAGE) Apartments [](https://www.expedia.com/Hotel-Search?destination=San+Rafael%2C+California%2C+United+States+of+America®ionId=9924&latLong=37.973534%2C-122.53109&adults=2&startDate=2026-05-26&d1=2026-05-26&endDate=2026-05-29&d2=2026-05-29&lodging=APARTMENT) Condos [](https://www.expedia.com/Hotel-Search?destination=San+Rafael%2C+California%2C+United+States+of+America®ionId=9924&latLong=37.973534%2C-122.53109&adults=2&startDate=2026-05-26&d1=2026-05-26&endDate=2026-05-29&d2=2026-05-29&lodging=CONDO) Villas [](https://www.expedia.com/Hotel-Search?destination=San+Rafael%2C+California%2C+United+States+of+America®ionId=9924&latLong=37.973534%2C-122.53109&adults=2&startDate=2026-05-26&d1=2026-05-26&endDate=2026-05-29&d2=2026-05-29&lodging=VILLA) Aparthotels [](https://www.expedia.com/Hotel-Search?destination=San+Rafael%2C+California%2C+United+States+of+America®ionId=9924&latLong=37.973534%2C-122.53109&adults=2&startDate=2026-05-26&d1=2026-05-26&endDate=2026-05-29&d2=2026-05-29&lodging=APART_HOTEL) Houseboats [](https://www.expedia.com/Hotel-Search?destination=San+Rafael%2C+California%2C+United+States+of+America®ionId=9924&latLong=37.973534%2C-122.53109&adults=2&startDate=2026-05-26&d1=2026-05-26&endDate=2026-05-29&d2=2026-05-29&lodging=HOUSE_BOAT) ![](https://a.travel-assets.com/pricing-claim/sparkle_dark.svg) Save an average of 15% on thousands of hotels when you're signed in [Sign in ](https://expedia.com/user/signin?ckoflag=0&uurl=e3id%3Dredr%26rurl%3D%2FSan-Rafael-Houseboats.d9924-aaHouseboats.Travel-Guide-Accommodation)[ Sign up, it's free ](https://expedia.com/signup?enable_registration=true&+=&uurl=e3id%3Dredr%26rurl%3D%2FSan-Rafael-Houseboats.d9924-aaHouseboats.Travel-Guide-Accommodation) ## Top San Rafael Hotel Reviews ![Holiday Inn Golden Gateway by IHG](https://images.trvl-media.com/lodging/1000000/20000/10600/10538/9ba9bb1f_y.jpg) ### Holiday Inn Golden Gateway by IHG 10/10 Excellent "Great location close to everything " [](https://expedia.com/San-Francisco-Hotels-Holiday-Inn-Golden-Gateway.h10538.Hotel-Information) ![Hotel Nikko San Francisco](https://images.trvl-media.com/lodging/1000000/30000/23500/23406/6c2cdc12_y.jpg) ### Hotel Nikko San Francisco 10/10 Excellent "Kat at reception was great and very friendly during our stay" [](https://expedia.com/San-Francisco-Hotels-Hotel-Nikko-San-Francisco.h23406.Hotel-Information) ![The Marker Union Square San Francisco](https://images.trvl-media.com/lodging/1000000/20000/15800/15769/a6ba3784_y.jpg) ### The Marker Union Square San Francisco 10/10 Excellent "The Marker is a great hotel. We were unsure of the area. In all the area was safe. The hotel staff were super friendly and helpful. My family and I took an Uber to pier 39 and walked back hitting a few of the tourist spots. " [](https://expedia.com/San-Francisco-Hotels-The-Marker-San-Francisco.h15769.Hotel-Information) ![Hilton San Francisco Financial District](https://images.trvl-media.com/lodging/1000000/10000/4400/4302/77af977e_y.jpg) ### Hilton San Francisco Financial District 10/10 Excellent "Staff was wonderful, view was awesome and the stay was nice. Will return to this Hotel." [](https://expedia.com/San-Francisco-Hotels-Hilton-San-Francisco-Financial-District.h4302.Hotel-Information) ![Hotel Zephyr San Francisco](https://images.trvl-media.com/lodging/10000000/9870000/9868900/9868852/fd976170_y.jpg) ### Hotel Zephyr San Francisco 10/10 Excellent "Staff was very friendly, we arrived really early and they held our bags for us to we could go and explore. They also held our bags after we checked out, because we weren’t ready to head out yet and still had sight seeing to do. Room was nice and clean. AC was good but seemed a little warm for my preference. Would definitely stay again. " [](https://expedia.com/San-Francisco-Hotels-Hotel-Zephyr-San-Francisco.h9868852.Hotel-Information) ![Hyatt Place San Francisco Downtown](https://images.trvl-media.com/lodging/32000000/31420000/31419900/31419890/fc76649d_y.jpg) ### Hyatt Place San Francisco Downtown 10/10 Excellent "Clean" [](https://expedia.com/San-Francisco-Hotels-Hyatt-Place-San-Francisco-Downtown.h31419890.Hotel-Information) ![Hotel Julian](https://images.trvl-media.com/lodging/101000000/100370000/100366800/100366713/d00e2834_y.jpg) ### Hotel Julian 10/10 Excellent "Wonderful hotel! I was able to check in early. There are pastries, yogurt, and coffee at 7:30 am. Free filtered water machine ( for your water bottle). Great location. Daily housekeeping. Big television. No Bible in room! Great location. Security. Quiet." [](https://expedia.com/San-Francisco-Hotels-Hotel-Julian.h100366713.Hotel-Information) ![Club Quarters Hotel in San Francisco](https://images.trvl-media.com/lodging/1000000/920000/913000/912982/5ee1ba27_y.jpg) ### Club Quarters Hotel in San Francisco 10/10 Excellent "Great location , rooms nice and clean . " [](https://expedia.com/San-Francisco-Hotels-Club-Quarters-Hotel-In-San-Francisco.h912982.Hotel-Information) ![Hilton San Francisco Union Square](https://images.trvl-media.com/lodging/1000000/30000/25700/25622/e6c58ddf_y.jpg) ### Hilton San Francisco Union Square 10/10 Excellent "Nice and clean " [](https://expedia.com/San-Francisco-Hotels-Hilton-San-Francisco-Union-Square.h25622.Hotel-Information) ## Find out more about San Rafael ## San Rafael Houseboats information | Number of reviews | | | ----------------- | ---------- | | Accommodation | Houseboats | | Lowest Price | | | Highest Price | | ## Frequently asked questions ### How much do houseboats in San Rafael cost? ### How many houseboats are there in San Rafael? ### Why book your houseboat in San Rafael with Expedia? ### How can I find cheap houseboats in San Rafael? ### What is there to do in San Rafael near my houseboat? ## Explore a world of travel with Expedia - Lodging - Flights - Packages - Cars - Vacation Rentals - Other - 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[Hotels with Hot Tubs in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Hotels-With-Hot-Tubs.0-0-d6023567-tHotelsWithHotTubs.Hotel-Filter-Destinations) - [Historic Hotels in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Historic-Hotel.0-0-d6023567-tHistoricHotel.Hotel-Filter-Destinations) - [Hotels with Bars in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Bar-Hotel.0-0-d6023567-tBarHotel.Hotel-Filter-Destinations) - [Hotels with smoking rooms in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Hotels-With-Smoking-Rooms.0-0-d6023567-tHotelswithsmokingrooms.Hotel-Filter-Destinations) - [Extended Stay Hotels in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Extended-Stay-Hotels.0-0-d6023567-tExtendedStayHotels.Hotel-Filter-Destinations) - [Hotels with Connecting Rooms in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Hotels-With-Adjoining-Rooms.0-0-d6023567-tHotelswithAdjoiningRooms.Hotel-Filter-Destinations) - 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[Hotels with Free Parking in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Hotels-With-Free-Parking.0-0-d6023567-tHotelswithFreeParking.Hotel-Filter-Destinations) - [Gay friendly Hotels in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-LGBT-Welcoming-Hotel.0-0-d6023567-tLGBTWelcomingHotel.Hotel-Filter-Destinations) - [Hotels with Room Service in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Hotels-With-Room-Service.0-0-d6023567-tHotelswithRoomService.Hotel-Filter-Destinations) - [Boutique Hotels in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Boutique-Hotel.0-0-d6023567-tBoutiqueHotel.Hotel-Filter-Destinations) - [Hotels with Air Conditioning in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Hotels-With-Air-Conditioning.0-0-d6023567-tHotelswithAirConditioning.Hotel-Filter-Destinations) - [Hotels & Resorts for Couples in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Couples-Resorts-Hotels.0-0-d6023567-tCouplesResortsHotels.Hotel-Filter-Destinations) - [Hotels on the River in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Riverside-Hotels.0-0-d6023567-tRiversideHotels.Hotel-Filter-Destinations) - [Quiet Resorts & in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Secluded-Hotels.0-0-d6023567-tSecludedHotels.Hotel-Filter-Destinations) - [Ski Hotels in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Ski-Hotel.0-0-d6023567-tSkiHotel.Hotel-Filter-Destinations) - [Hotels with Laundry Facilities in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Hotels-With-Laundry-Facilities.0-0-d6023567-tHotelswithLaundryFacilities.Hotel-Filter-Destinations) - [All-Inclusive Resorts in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-All-Inclusive-Hotel.0-0-d6023567-tAllinclusiveHotel.Hotel-Filter-Destinations) - [Winery Hotels in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Winery-Hotel.0-0-d6023567-tWineryHotel.Hotel-Filter-Destinations) - [Non-Smoking Hotels in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-Smoke-Free-Hotels.0-0-d6023567-tSmokeFreeHotels.Hotel-Filter-Destinations) - [Green Hotels in Marin County ](https://www.expedia.com/Destinations-In-Marin-County-GreenSustainable.0-0-d6023567-tGreenSustainable.Hotel-Filter-Destinations) - [Hotels near Classic Billiards ](https://www.expedia.com/Classic-Billiards-Hotels.0-l553248621532640604-0.Travel-Guide-Filter-Hotels) - [Hotels near Marin History Museum ](https://www.expedia.com/Marin-History-Museum-Hotels.0-l6334915-0.Travel-Guide-Filter-Hotels) - [Hotels near Mission San Rafael Arcangel ](https://www.expedia.com/Mission-San-Rafael-Arcangel-Hotels.0-l6065807-0.Travel-Guide-Filter-Hotels) - [Hotels near Falkirk Cultural Center ](https://www.expedia.com/Falkirk-Cultural-Center-Hotels.0-l553248621558560563-0.Travel-Guide-Filter-Hotels) - [Hotels near Rebound Bookstore ](https://www.expedia.com/Rebound-Bookstore-Hotels.0-l553248621532640603-0.Travel-Guide-Filter-Hotels) - [Hotels near Marin Bocce Federation ](https://www.expedia.com/Marin-Bocce-Federation-Hotels.0-l6334892-0.Travel-Guide-Filter-Hotels) - [Hotels near San Rafael Pacifics Albert Park ](https://www.expedia.com/San-Rafael-Pacifics-Albert-Park-Hotels.0-l553248621558560559-0.Travel-Guide-Filter-Hotels) - [Hotels near Gerstle Park ](https://www.expedia.com/Gerstle-Park-Hotels.0-l553248621558560562-0.Travel-Guide-Filter-Hotels) - [Hotels near West End ](https://www.expedia.com/West-End-San-Rafael-Hotels.0-n553248635976472269-0.Travel-Guide-Filter-Hotels) - [Hotels near Dominican University of California ](https://www.expedia.com/Dominican-University-Of-California-Hotels.0-l6237435-0.Travel-Guide-Filter-Hotels) - [Flights to San Francisco ](https://www.expedia.com/Cheap-Flights-To-San-Francisco.d178305.Travel-Guide-Flights) - [Flights to Marin County ](https://www.expedia.com/Destinations-In-Marin-County.d6023567.Flight-Destinations) - [Flights from Marin County ](https://www.expedia.com/lp/flights/6023567/flights-from-marin-county) - [Visit Marin County ](https://www.expedia.com/Marin-County.dx6023567) - [Marin County Vacations ](https://www.expedia.com/Marin-County.d6023567.Destination-Travel-Guides) - [Classic Billiards ](https://www.expedia.com/Classic-Billiards-San-Rafael.d553248621532640604.Vacation-Attraction) - [Mission San Rafael Arcangel ](https://www.expedia.com/Mission-San-Rafael-Arcangel-San-Rafael.d6065807.Vacation-Attraction) - [Marin History Museum ](https://www.expedia.com/Marin-History-Museum-San-Rafael.d6334915.Vacation-Attraction) - [Falkirk Cultural Center ](https://www.expedia.com/Falkirk-Cultural-Center-San-Rafael.d553248621558560563.Vacation-Attraction) - [Rebound Bookstore ](https://www.expedia.com/Rebound-Bookstore-San-Rafael.d553248621532640603.Vacation-Attraction) - [Marin Bocce Federation ](https://www.expedia.com/Marin-Bocce-Federation-Picnic-Valley.d6334892.Vacation-Attraction) - [Gerstle Park ](https://www.expedia.com/Gerstle-Park-San-Rafael.d553248621558560562.Vacation-Attraction) - 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