$396 Cheap Flights from Madison (MSN) to Juneau (JNU)

View $396 flight on Thu, Jan 22, 2026Opens in a new window

Popular airlines from Dane County Regional Airport (MSN) to Juneau, AK (JNU-Juneau Intl.)

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Cheap Flights from Madison to Juneau (MSN-JNU)

Prices were available within the past 7 days and start at $396 for one-way flights and $694 for round trip, for the period specified. Prices and availability are subject to change. Additional terms apply.

American Airlines
Wed, Jan 21 - Mon, Feb 9
MSN
Madison
JNU
Juneau
$694 Roundtrip, found 5 days ago
$694
Roundtrip
found 5 days ago
Select American Airlines flight, departing Wed, Jan 21 from Madison to Juneau, returning Mon, Feb 9, priced at $694 found 5 days ago
American Airlines
Thu, Jan 22 - Mon, Feb 9
MSN
Madison
JNU
Juneau
$717 Roundtrip, found 5 days ago
$717
Roundtrip
found 5 days ago
Select American Airlines flight, departing Thu, Jan 22 from Madison to Juneau, returning Mon, Feb 9, priced at $717 found 5 days ago
American Airlines
Wed, Jan 21 - Sun, Feb 8
MSN
Madison
JNU
Juneau
$718 Roundtrip, found 5 days ago
$718
Roundtrip
found 5 days ago
Select American Airlines flight, departing Wed, Jan 21 from Madison to Juneau, returning Sun, Feb 8, priced at $718 found 5 days ago
American Airlines
Tue, Dec 16 - Mon, Jan 5
MSN
Madison
JNU
Juneau
$720 Roundtrip, found 5 days ago
$720
Roundtrip
found 5 days ago
Select American Airlines flight, departing Tue, Dec 16 from Madison to Juneau, returning Mon, Jan 5, priced at $720 found 5 days ago
American Airlines
Wed, Jan 7 - Tue, Jan 20
MSN
Madison
JNU
Juneau
$725 Roundtrip, found 5 days ago
$725
Roundtrip
found 5 days ago
Select American Airlines flight, departing Wed, Jan 7 from Madison to Juneau, returning Tue, Jan 20, priced at $725 found 5 days ago
American Airlines
Thu, Jan 22 - Sun, Feb 8
MSN
Madison
JNU
Juneau
$737 Roundtrip, found 5 days ago
$737
Roundtrip
found 5 days ago
Select American Airlines flight, departing Thu, Jan 22 from Madison to Juneau, returning Sun, Feb 8, priced at $737 found 5 days ago
American Airlines
Tue, Jan 27 - Wed, Feb 11
MSN
Madison
JNU
Juneau
$738 Roundtrip, found 5 days ago
$738
Roundtrip
found 5 days ago
Select American Airlines flight, departing Tue, Jan 27 from Madison to Juneau, returning Wed, Feb 11, priced at $738 found 5 days ago
American Airlines
Sat, Jan 24 - Mon, Feb 9
MSN
Madison
JNU
Juneau
$742 Roundtrip, found 5 days ago
$742
Roundtrip
found 5 days ago
Select American Airlines flight, departing Sat, Jan 24 from Madison to Juneau, returning Mon, Feb 9, priced at $742 found 5 days ago
American Airlines
Wed, Jan 21 - Fri, Feb 6
MSN
Madison
JNU
Juneau
$744 Roundtrip, found 5 days ago
$744
Roundtrip
found 5 days ago
Select American Airlines flight, departing Wed, Jan 21 from Madison to Juneau, returning Fri, Feb 6, priced at $744 found 5 days ago
Alaska Airlines
Fri, Jun 5 - Sat, Jun 13
MSN
Madison
JNU
Juneau
$842 Roundtrip, found 4 days ago
$842
Roundtrip
found 4 days ago
Select Alaska Airlines flight, departing Fri, Jun 5 from Madison to Juneau, returning Sat, Jun 13, priced at $842 found 4 days ago
Flights from Madison (MSN) to Juneau (JNU)
Origin airport
Dane County Regional
Destination airport
Juneau Intl.
Roundtrip price
$693
Distance
2183 mi

Madison to Juneau Flights

The cheapest times to fly from Madison to Juneau

On average, Thursday can be the cheapest time to fly, according to data from the Airlines Reporting Corporation (ARC), one of the world's biggest databases for global airline sales. The data reveals that you could save up to 16% by flying on a Thursday—the cheapest day to travel on average—instead of a Sunday—the most expensive. Some of the most affordable flights from Madison to Juneau are during the month of January. You can find some of the cheapest flights from Madison to Juneau with Expedia's search tool and vast selection of airlines.

 

The best time to book a flight from Madison to Juneau

Sunday is one of the best days to book for cheap flights from Madison to Juneau: Tickets reserved on a Sunday cost between 6% and 13% less than those reserved on a Friday, according to ARC data. The data also suggests booking early can also lead to cheaper airfares. You could save 24% by buying your tickets for domestic flights at least a month in advance and 10% by booking international flights 2 months in advance.

 

How to find cheap round-trip tickets from Madison to Juneau

Being flexible with your dates and using Expedia's Price Drop Protection and Price Tracking features are some of the best ways of finding a cheap ticket from Madison to Juneau in 2025. You can also book with separate airlines for your outbound and return journeys, from $396 one-way. Expedia also offers Price Drop Protection, so if the cost of your airfare goes down after booking, you'll receive a credit for the difference*. This is available for a small fee, and is free to One Key Gold and Platinum tier members.

 

Expedia's Price Tracking feature means you can stay on top of airfares without manually checking every day. It sends you automated price alerts for cheap Madison to Juneau flights and uses historical data to indicate when the best time to book is. Download Expedia's free app to activate this handy tool in a few easy taps.

 

You could also save big by booking one of Expedia's vacation packages. Bundling together your Madison to Juneau airfare with your accommodations and car rental is often cheaper than booking everything separately. There’s also One Key, Expedia's generous rewards program. Join for free and you could earn One Key cash on most bookings to save on future adventures.

 

*Terms apply.

 

Disclaimer: ARC The statistics are based on average round-trip ticket prices between January and August 2023. The percentages you see are averages.

 

Frequently asked questions

How much does a flight from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU) cost?
Grab a cheap one-way flight from $396 or cheap return flight from $694 from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU) with Expedia. Enter your travel dates and sort by "Price (lowest to highest)" to see our cheapest flight offers on this route.
What is the cheapest month to fly from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU)?
The cheapest month to fly from MSN to JNU is January, when there's less demand. Off-peak season is usually when you'll find lower airfares between these airports.
What is the cheapest airline that flies from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU)?
Use the filter tool on Expedia to compare airlines and find the cheapest carrier that'll fly you from MSN to JNU. Then, sort your results by "Price (lowest to highest)" to score a good deal.
How many flights per day from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU)?
There aren't any daily nonstop flights departing from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU). But you can choose flights with layovers. Filter your search on Expedia to include one or more stops, and you'll be on your way in no time.
What day of the week has the most flights from MSN to JNU?
Friday is generally the busiest day for flights, while Tuesday tends to be the quietest.* Keep in mind that flight schedules can vary depending on a number of factors, including the time of year and airline.*Busiest/quietest day to travel is based on Expedia flight demand through January to December 2024.
What is the best time to fly from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU)?
To avoid possible delays on the Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU) route, fly before 3 PM. Departures after this hour have a 22% higher chance of being canceled.**Most reliable time of the day and month to travel recommendation is based on January through August 2024 flight status data sourced from OAG's global flight data platform.
Is it cheaper to buy a plane ticket from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU) last-minute?
Waiting until just before your departure to book a flight from MSN to JNU often results in higher prices. While you may find some last-minute offers, they aren't always guaranteed. Allow some flexibility in your schedule for the best chance of scoring a bargain.
Is it cheaper to book a MSN to JNU flight and hotel package?
Booking a MSN to JNU flight and hotel package is generally cheaper than booking separately. With Expedia, you can enjoy the ease of organizing your travels in one place. Select from our wide range of accommodations and then add activities, car rentals and flights to your booking. Bundle everything together, and you could save hundreds of dollars.
Can I cancel or change the date of my flight from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU)?
It's usually possible to reschedule or cancel your MSN to JNU flight. However, for bookings made more than 24 hours ago, additional fees may apply. Refer to your airline's policies in your itinerary to see what changes are allowed and if any costs are involved. You'll also find more details on our Customer Service portal.

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*Available to One Key members.