Beginning of main content
Trip Type
Flight 1
Flight 2
Flight 3
Flight 4
Flight 5

Search 321,000 hotels worldwide.

Get the price guarantee available for your trip.

No Expedia cancellation fee to change or cancel almost any hotel reservation.


Featured Rochester Independent Hotels

See all 149 Hotels in Rochester
Kahler Grand Hotel

Kahler Grand Hotel

20 2nd Ave Sw, Rochester
3.0 out of 5.0
3.3 out of 5 (738 reviews)
Economy Room For the price, the room was as expected. Small but comfortable. The cost of parking in Rochester is … - 

$76

$76
Kahler Inn and Suites - Mayo Clinic Area

Kahler Inn and Suites - Mayo Clinic Area

9 3rd Ave Nw, Rochester
3.0 out of 5.0
3.7 out of 5 (411 reviews)
Friendly staff. Super close to mayo clinic. Overall good stay while visiting Mayo. - 

$101

$101
Kahler Apache

Kahler Apache

1517 16th St Sw, Rochester
3.0 out of 5.0
3.4 out of 5 (192 reviews)
Nice family friendly hotel The staff was friendly and professional. Room was clean and night was quiet. - 

$76

$76
GuestHouse International Inn & Suites Rochester

GuestHouse International Inn & Suites Rochester

435 16th Ave Nw, Rochester
2.5 out of 5.0
3.6 out of 5 (282 reviews)
The rooms at Guesthouse are always clean and comfortable. - 

$80

$80
The Plaza Hotel & Suites Winona

The Plaza Hotel & Suites Winona

1025 Highway 61 E, Winona
3.0 out of 5.0
4.4 out of 5 (69 reviews)
Great hotel in beautiful Winona! Clean quiet rooms, friendly staff, great hotel to stay at if you're visiting kids at WSU or here to … - 

$122

$122
Country Inn & Suites By Carlson, Rochester, MN

Country Inn & Suites By Carlson, Rochester, MN

4323 Highway 52 North, West Frontage Rd, Rochester
2.5 out of 5.0
3.9 out of 5 (82 reviews)
GREAT PLACE TO STAY if Going to Mayo! Clean room. Breakfast very good. Shuttle to Mayo is directly from the motel & is awesome - anytime … - 

$84

$84
Country Inn & Suites By Carlson, Rochester South, MN

Country Inn & Suites By Carlson, Rochester South, MN

77 Woodlake Drive SE, Rochester
3.0 out of 5.0
4.3 out of 5 (127 reviews)
Very helpful and pleasant. Staff was amazing and accommodated all of our needs. - 

$93

$93
Ramada Albert Lea

Ramada Albert Lea

2301 E Main St, Albert Lea
2.0 out of 5.0
3.3 out of 5 (134 reviews)
Very nice staff, convenient location Overall a decent hotel. Older yes but they are nicely updating it. I like that the rooms are not ca … - 

$63

$63
Brentwood Inn & Suites

Brentwood Inn & Suites

123 Fourth Ave. NW, Rochester
2.5 out of 5.0
4.2 out of 5 (92 reviews)
Reliable and Economical It is not often you find a clean, well run, convenient and affordable hotel. Brentwood is one of th … - 

$113

$113
Holiday Inn Rochester Downtown

Holiday Inn Rochester Downtown

220 S Broadway, Rochester
3.0 out of 5.0
3.5 out of 5 (182 reviews)
Wedding Retreat We had a wedding in the Rochester area, and definitely enjoyed our stay at the hotel. It was clean … - 

$104

$104
Aspen Select

Aspen Select

1215 2nd St SW, Rochester
3.5 out of 5.0
4.3 out of 5 (37 reviews)
very close to what I needed check in great, breakfast good, comfortable beds, good parking, great check out. - 

$120

$120
La Quinta Inn & Suites Rochester

La Quinta Inn & Suites Rochester

4353 Canal Pl SE, Rochester
3.0 out of 5.0
4.4 out of 5 (105 reviews)
Close to where we wanted to be, Not much soundproofing between you and the upper floors. Heard people walking for most of the night … - 

$94

$94
Express Suites Riverport Inn & Suites

Express Suites Riverport Inn & Suites

900 Bruski Dr, Winona
3.0 out of 5.0
4.0 out of 5 (68 reviews)
Too hot or too cool Heating system in room and pool area were not working. Room was 79 degrees and pool area was freezi … - 

$115

$115
Americas Best Value Inn & Suites

Americas Best Value Inn & Suites

1420 Riverview Dr, Northfield
2.0 out of 5.0
2.7 out of 5 (52 reviews)
Not fancy, but clean and quiet The owner and his wife attend to the hotel and the desk staff were very helpful. The breakfast had … - 

$100

$100
Nichols Inn of Red Wing

Nichols Inn of Red Wing

1819 Old West Main Street, Red Wing
2.5 out of 5.0
4.3 out of 5 (69 reviews)
very welcoming motel four of us friends stayed at the Nichols Inn over the art fair weekend. we found it to be very comf … - 

$95

$95
AmericInn Hotel & Suites Winona

AmericInn Hotel & Suites Winona

303 Pelzer Street, Winona
2.5 out of 5.0
4.6 out of 5 (7 reviews)
Clean and Comfortable The hotel was clean and comfortable. Will definitely stay here again. - 

$120

$120
Country Inn & Suites By Carlson, Red Wing, MN

Country Inn & Suites By Carlson, Red Wing, MN

4275 Hwy 61 West, Red Wing
2.5 out of 5.0
4.4 out of 5 (52 reviews)
Great stay We were very impressed with everything about your hotel & will definitely return in the near future … - 

$107

$107
Hotel Winneshiek

Hotel Winneshiek

104 East Water Street, Decorah
3.5 out of 5.0
4.6 out of 5 (31 reviews)
Nice location. Didn't have to drive anywhere to find nice places to eat. - 

$118

$118
Holiday Inn Express & Suites Rochester West Medical Center

Holiday Inn Express & Suites Rochester West Medical Center

155 16th Avenue SW, Rochester
2.5 out of 5.0
4.3 out of 5 (43 reviews)
I was there for appointments at the Mayo Clinic and it was close to the Clinic. - 

$110

$110
AmericInn Hotel & Suites Rochester Airport

AmericInn Hotel & Suites Rochester Airport

7320 Airport View Dr Sw, Rochester
2.0 out of 5.0
4.1 out of 5 (37 reviews)
Pool area Pool was small and water was cloudy. Hot tub was good. - 

$95

$95
Map

Recently booked Rochester hotels

Hilton Garden Inn Rochester Downtown, MN
3.0 out of 5.0
Last booking: 1 hour ago
Kahler Apache
3.0 out of 5.0
Last booking: 4 hours ago
Red Carpet Inn Rochester
2.0 out of 5.0
Last booking: 7 hours ago
Country Inn & Suites By Carlson Rochester South
3.0 out of 5.0
Last booking: 8 hours ago
Motel 6 Rochester, MN
1.5 out of 5.0
Last booking: 8 hours ago
GuestHouse International Inn & Suites Rochester
2.5 out of 5.0
Last booking: 9 hours ago
Holiday Inn Rochester Downtown
3.0 out of 5.0
Last booking: 9 hours ago
Super 8 Rochester/Fairgrounds Area
2.0 out of 5.0
Last booking: 9 hours ago
The Towers At Kahler Grand Hotel
4.0 out of 5.0
Last booking: 9 hours ago

Independent Rochester Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in Rochester, Minnesota. Known for well-appointed rooms and friendly, personalized service, each of the top Independent Rochester hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some Rochester Independent locations may even offer extra little benefits and discounts for frequent travelers.