Search Hotels in Clayton County

  • Upfront pricing

    Our total price for your stay includes taxes and fees
  • Treat yourself

    Save 10% or more on over 100,000 hotels worldwide with Member Prices
  • Be picky

    Search almost a million properties worldwide

Top Cities in Clayton County

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Clayton County hotels

Trickling Waters Retreat

Trickling Waters Retreat
3.0 star property
Marquette
9.8 out of 10, Exceptional, (285 reviews)
"Nice place to stay and the host was great and very accommodating!"
United States
Scott
$69 nightly
The price is $77
Feb 2 - Feb 3
Total with taxes and fees
Trickling Waters Retreat

Comfort Inn & Suites Marquette - Prairie du Chien

Comfort Inn & Suites Marquette - Prairie du Chien
2.5 star property
Marquette
9.0 out of 10, Wonderful, (964 reviews)
"Great location."
United States
Kelly
$77 nightly
The price is $86
Feb 5 - Feb 6
Total with taxes and fees
Comfort Inn & Suites Marquette - Prairie du Chien

Eagle View Motel & Retreat

Eagle View Motel & Retreat
2.5 star property
Guttenberg
9.6 out of 10, Exceptional, (169 reviews)
"Nice room with a beautiful view. Will definitely stay again. "
United States
Tina
$86 nightly
The price is $97
Feb 11 - Feb 12
Total with taxes and fees
Eagle View Motel & Retreat

Fritz’s Farmhouse.. Country getaway.

Fritz’s Farmhouse.. Country getaway.
Guttenberg
10.0 out of 10, Exceptional, (74 reviews)
"Love the house, it was really neat! Lots of room to park boats. Will stay again!"
United States
Timothy D.
$205 nightly
The price is $230
Jan 30 - Jan 31
Total with taxes and fees
Fritz’s Farmhouse.. Country getaway.

Mr. Rogers River View

Mr. Rogers River View
Guttenberg
9.6 out of 10, Exceptional, (39 reviews)
"We enjoyed relaxing in the living area. We ate at the Lighthouse in Clayton. We visited the coffee shop, brewery and winery. This place has a great view. Our only complaint was the bed. "
United States
Lynnette L.
$158 nightly
The price is $176
Feb 1 - Feb 2
Total with taxes and fees
Mr. Rogers River View

Historic Sadie's Log Cabin

Historic Sadie's Log Cabin
McGregor
10.0 out of 10, Exceptional, (7 reviews)
"Very clean, great area, fire was going when we arrived."
United States
Ahren R.
$160 nightly
The price is $179
Feb 11 - Feb 12
Total with taxes and fees
Historic Sadie's Log Cabin

Water Street Cabin! Waterfront 2 bedroom, 1.5 bath, sleeps 8

Water Street Cabin! Waterfront 2 bedroom, 1.5 bath, sleeps 8
Marquette
8.6 out of 10, Excellent, (16 reviews)
"Water Street Cabin had everything we needed to make ourselves comfortable, cook our meals, and relax. We stayed with our 3 adult children and had plenty of space. We enjoyed the location, and getting to hot tub was a true bonus."
United States
Norine S.
Water Street Cabin! Waterfront 2 bedroom, 1.5 bath, sleeps 8

Elkader Iowa Bed & Breakfast, 2nd floor suite

Elkader Iowa Bed & Breakfast, 2nd floor suite
Elkader
10.0 out of 10, Exceptional, (16 reviews)
"Such a great place to stay. We had a lot of room, and it's in downtown so we could walk to restaurants and shops. Plus we had a very tasty breakfast! We will plan to use Goldfinch Suites in the future!!"
United States
Le C.
$94 nightly
The price is $105
Feb 2 - Feb 3
Total with taxes and fees
Elkader Iowa Bed & Breakfast, 2nd floor suite

Charming 2-bedroom suite A with WiFi, AC in adorable Elkader

Charming 2-bedroom suite A with WiFi, AC in adorable Elkader
Elkader
10.0 out of 10, Exceptional, (5 reviews)
"The apartment is spacious, very clean, and comfortable. It features beautiful views of Elkader. The location is in easy walking distance to the shops, restaurants, and riverfront trail. I hope to stay again. "
United States
Robert
$130 nightly
The price is $145
Feb 8 - Feb 9
Total with taxes and fees
Charming 2-bedroom suite A with WiFi, AC in adorable Elkader

Bluffside Chalet Suite

Bluffside Chalet Suite
McGregor
9.4 out of 10, Exceptional, (3 reviews)
"Close walk to all the shops and restaurants !"
United Kingdom
Debbie T.
$155 nightly
The price is $174
Feb 2 - Feb 3
Total with taxes and fees
Bluffside Chalet Suite

Off season SPECIAL! Prices are slashed! 2bd-1barh with outdoor covered tv area

Off season SPECIAL! Prices are slashed! 2bd-1barh with outdoor covered tv area
Guttenberg
9.8 out of 10, Exceptional, (54 reviews)
"Exceptionally clean. While the trains were loud, we quickly grew accustomed to them. Great place to stay!"
United States
Valerie
Off season SPECIAL! Prices are slashed! 2bd-1barh with outdoor covered tv area

Cozy Alpine Retreat in Historic Downtown

Cozy Alpine Retreat in Historic Downtown
McGregor
10.0 out of 10, Exceptional, (11 reviews)
"Property Clean and well furnished. Town and area very nice."
United States
Robert J.
$134 nightly
The price is $151
Feb 2 - Feb 3
Total with taxes and fees
Cozy Alpine Retreat in Historic Downtown

Primitive yet classy apartment in rural Iowa near small town shopping and hiking

Primitive yet classy apartment in rural Iowa near small town shopping and hiking
Colesburg
10.0 out of 10, Exceptional, (10 reviews)
"This property is so beautiful and well appointed! We enjoyed our stay, had everything we needed and contact with Dekker was prompt and helpful! My family and I were happy to stay here and will do it again if our travels bring us back through Iowa. "
United States
Jessica H.
Primitive yet classy apartment in rural Iowa near small town shopping and hiking

1st Floor 2BR Downtown + 2 Parking Spaces

1st Floor 2BR Downtown + 2 Parking Spaces
Elkader
10.0 out of 10, Exceptional, (1 review)
$141 nightly
The price is $158
Feb 2 - Feb 3
Total with taxes and fees
1st Floor 2BR Downtown + 2 Parking Spaces

American House 1854- Pocket City Penthouse, 2 Bedrooms, Full Kitchen & Dining

American House 1854- Pocket City Penthouse, 2 Bedrooms, Full Kitchen & Dining
McGregor
9.6 out of 10, Exceptional, (14 reviews)
"Second time staying at the property and it was just as great as the first time. Charming place with an excellent location. Highly recommend!"
United States
Matt H.
American House 1854- Pocket City Penthouse, 2 Bedrooms, Full Kitchen & Dining

Hooks & Honkers Hideout - Cozy 2BR Retreat Near Mississippi River!

Hooks & Honkers Hideout - Cozy 2BR Retreat Near Mississippi River!
Guttenberg
10.0 out of 10, Exceptional, (3 reviews)
"The owners/management were very communicative throughout the whole process. Their check in/out process was seamless. "
United States
CG H.
Hooks & Honkers Hideout - Cozy 2BR Retreat Near Mississippi River!

Keystone Bridge Suite

Keystone Bridge Suite
Elkader
$132 nightly
The price is $148
Feb 2 - Feb 3
Total with taxes and fees
Keystone Bridge Suite

Centrally located in the NE Iowa Driftless Area!

Centrally located in the NE Iowa Driftless Area!
Monona
10.0 out of 10, Exceptional, (58 reviews)
"We have stayed at Tim & Bridget's house a few times now, and it is always clean, super-easy to check in & out, and a stress-less place to hang out. "
United States
Brent T.
$178 nightly
The price is $199
Jan 30 - Jan 31
Total with taxes and fees
Centrally located in the NE Iowa Driftless Area!

Water Street Lodge! Waterfront 4 Bedroom, 4 Bath, Sleeps 12!

Water Street Lodge! Waterfront 4 Bedroom, 4 Bath, Sleeps 12!
Marquette
9.4 out of 10, Exceptional, (36 reviews)
"This is the 2nd time we’ve stayed here and it’s perfect for us. Check in was easy and we loved the view."
United States
Anonymous traveler
Water Street Lodge! Waterfront 4 Bedroom, 4 Bath, Sleeps 12!

Haven Point is Spacious and Great for Families.

Haven Point is Spacious and Great for Families.
Strawberry Point
10.0 out of 10, Exceptional, (22 reviews)
"It was a really fun place to stay. We will definitely stay again."
United States
Renee S.
Haven Point is Spacious and Great for Families.
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Great weekend hotel deals in Clayton County, IA

Showing deals for:Feb 6 - Feb 8

Save an average of 15% on thousands of hotels when you're signed in

Top Clayton County Hotel Reviews

Explore a world of travel with Expedia