Find hotels near Shelter Island, San Diego from $89

    Plan, book, stay with confidence
    bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    one key icon
    Treat yourself
    Save instantly and earn perks with One Key
    today icon
    Change your mind
    Book hotels with free cancellation

Find properties with these dates

Filter by

Popular filters
Popular filters
Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Neighborhood
Neighborhood
Popular locations
Popular locations
Meal plans available
Meal plans available
Amenities
Amenities
Accessibility
Accessibility
Traveler experience
Traveler experience

Compare 6,747 hotels close to Shelter Island with room rates, reviews, and availability. Most hotels are fully refundable.

Wyndham San Diego Bayside
4.0 star property
8.2 out of 10, Very Good, (5908)
"I enjoyed the convenience of being right downtown . Only stayed one night but it was an eventful one night with all the local little towns and eatery’s near by . "
The price is $161
$181 total
includes taxes & fees
May 23 - May 24
Wyndham San Diego Bayside
Paradise Point Resort & Spa
4.0 star property
8.4 out of 10, Very Good, (1823)
"I want to visit this property every month! I can’t say enough about how gorgeous the grounds are and walkable to the water. "
The price is $199
$270 total
includes taxes & fees
May 13 - May 14
Paradise Point Resort & Spa
The Dana on Mission Bay
3.5 star property
8.6 out of 10, Excellent, (2424)
"Check in was a breeze! We were offered a multitude of upgrade options. The view of the marina was stunning and the walk along the water and the sunsets were spectacular. We had dinner at the restaurant and sat outside. It was delicious and Manny our server was knowledgeable and friendly and made the experience all the more enjoyable. "
The price is $179
$202 total
includes taxes & fees
May 12 - May 13
The Dana on Mission Bay
Save an average of 15% on thousands of hotels when you're signed in
Omni San Diego Hotel
4.0 star property
9.0 out of 10, Wonderful, (1905)
"Great location for Petco Park and Gaslamp District"
The price is $209
$269 total
includes taxes & fees
May 15 - May 16
Omni San Diego Hotel
California Suites Hotel
2.0 star property
7.0 out of 10, Good, (1314)
"I like their swimming pool,parking lot and you get your privacy "
The price is $89
$101 total
includes taxes & fees
May 12 - May 13
California Suites Hotel
San Diego Mission Bay Resort
4.0 star property
8.2 out of 10, Very Good, (1013)
"Seating cushions outside on sofas and around pool very dirty"
The price is $211
$281 total
includes taxes & fees
May 12 - May 13
San Diego Mission Bay Resort
Mission Bay Inn San Diego
2.5 star property
7.4 out of 10, Good, (1012)
"Good"
The price is $89
$101 total
includes taxes & fees
May 27 - May 28
Mission Bay Inn San Diego
Hilton San Diego Bayfront
4.0 star property
8.4 out of 10, Very Good, (1483)
"Peter was great at check in. After a night out I needed assistance to my room and a staff member whose name I did not get, he helped me to my room safely. Everyone was very kind and helpful."
The price is $155
$223 total
includes taxes & fees
May 28 - May 29
Hilton San Diego Bayfront
Best Western Plus Island Palms Hotel & Marina
3.0 star property
8.8 out of 10, Excellent, (1581)
"Excellent hospitality. Staff was very kind and the amenities were great. Played a game of pickle ball through by renting some equipment and lounged at the pool. Bartender made some good drinks. Would recommend this hotel and would come back to try the restaurant next time."
The price is $155
$175 total
includes taxes & fees
May 12 - May 13
Best Western Plus Island Palms Hotel & Marina
DoubleTree by Hilton San Diego - Del Mar
4.0 star property
7.4 out of 10, Good, (1038)
"Clean and convenient "
The price is $127
$142 total
includes taxes & fees
May 27 - May 28
DoubleTree by Hilton San Diego - Del Mar
Palihotel San Diego
4.0 star property
8.8 out of 10, Excellent, (500)
"Stayed one night. Room was small, but comfortable. "
The price is $110
$152 total
includes taxes & fees
May 12 - May 13
Palihotel San Diego
Gaslamp Plaza Suites
3.5 star property
8.8 out of 10, Excellent, (1006)
"Love this place "
The price is $109
$120 total
includes taxes & fees
May 12 - May 13
Gaslamp Plaza Suites
Catamaran Resort and Spa
4.0 star property
7.8 out of 10, Good, (1114)
"The property was amazing with beautiful view, also not to far from anything. Relaxing on vacation would always be peasant here!"
The price is $209
$280 total
includes taxes & fees
May 12 - May 13
Catamaran Resort and Spa
Loews Coronado Bay Resort
4.0 star property
8.6 out of 10, Excellent, (1058)
"Nice property. Staff was great! "
The price is $219
$289 total
includes taxes & fees
May 12 - May 13
Loews Coronado Bay Resort
Pendry San Diego
5.0 star property
9.2 out of 10, Wonderful, (1004)
"Great location and nice view "
The price is $269
$353 total
includes taxes & fees
May 27 - May 28
Pendry San Diego
Kona Kai San Diego
4.0 star property
8.4 out of 10, Very Good, (937)
"The resort was an amazing experience, right on the Marina with its own private beach, everything is literally in reach. The perfect getaway most definitely would book again. "
The price is $245
$327 total
includes taxes & fees
May 12 - May 13
Kona Kai San Diego
Holiday Inn Express San Diego Downtown, an IHG Hotel
2.5 star property
8.2 out of 10, Very Good, (1005)
"Great stay. Wonderful breakfast options. "
The price is $144
$162 total
includes taxes & fees
May 27 - May 28
Holiday Inn Express San Diego Downtown, an IHG Hotel
Handlery Hotel
3.5 star property
7.8 out of 10, Good, (1568)
"I was in a quiet area."
The price is $109
$123 total
includes taxes & fees
May 12 - May 13
Handlery Hotel
Sheraton Mission Valley San Diego Hotel
4.0 star property
8.4 out of 10, Very Good, (1105)
"Great overall experience. "
The price is $125
$141 total
includes taxes & fees
May 27 - May 28
Sheraton Mission Valley San Diego Hotel
Lamplighter Inn & Suites at SDSU
2.5 star property
8.8 out of 10, Excellent, (1010)
"Very nice stay for 2 nights. The breakfast options were great and the front desk staff was very pleasant and extremely nice to let us exhausted travelers check in 2 hours early!"
The price is $175
$193 total
includes taxes & fees
May 12 - May 13
Lamplighter Inn & Suites at SDSU
Don't see what you're looking for?
See all available properties in Shelter Island
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, check out the 62 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Shelter Island?

Adjacent to Shelter Island, Kona Kai San Diego is one of the top choices for your stay based on our traveler data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Best Western Plus Island Palms Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 62 hotels and other accommodations within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! The majority of hotel room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and be given a refund within 24 hours of your booking. Put your dates in and click on "Search", then use the filter option "fully refundable" to view the top deals on offer near Shelter Island.

Where can I learn more about changing or cancelling my trip in the area near Shelter Island?

For more details about rescheduling or cancelling your stay near Shelter Island, click here.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego, or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse, and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park, and San Diego Civic Theatre.