Find hotels near Mission Bay, San Diego from $98

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Compare 6,987 hotels close to Mission Bay with room rates, reviews, and availability. Most hotels are fully refundable.

The Two-Story Irving Gill Penthouse | View from room
Orli La Jolla
2.0 star property
10.0 out of 10, Exceptional, (17)
"The property exceeded our expectations. Immaculate, eclectic and enjoyable is how I would describe our stay. The staff was very attentive and provided fantastic customer service. We will return to this wonderful hotel. "
The price is $310
$403 total
includes taxes & fees
May 6 - May 7
Orli La Jolla
Fridge, microwave, oven, stovetop
Family Game Room with Wet Bar, Pool Table/ Ping Pong Darts and more!
9.8 out of 10, Exceptional, (152)
"My sister and I stayed at the house for a week, this was our first trip to San Diego. The house was BEAUTIFUL! It was well stocked, had a lovely and very private backyard, and plenty of space to relax. The beds were so comfortable and the home was so cozy. We were centrally located to all the things we wanted to experience, Coronado Island, Old Town, Little Italy, La Jolla, and Balboa Park to name a few. Lael could not have been kinder or more accommodating. We will definitely stay at his place...
Family Game Room with Wet Bar, Pool Table/ Ping Pong Darts and more!
Interior
Between Beach and Bay.
9.6 out of 10, Exceptional, (7)
"Great host and a comfortable stay. I was a business trip and needed a bed for 2 nights. I fit the bill perfect The host was intelligent, welcomig, and provided exactly what was needed I would recommend this place."
Between Beach and Bay.
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Front of property - evening/night
Pantai Inn
3.5 star property
9.4 out of 10, Exceptional, (881)
"This was a lovely property. Beautiful location. We enjoyed our stay and will definitely be back."
The price is $356
$421 total
includes taxes & fees
May 19 - May 20
Pantai Inn
Aerial view
Grande Colonial Hotel
4.0 star property
9.4 out of 10, Exceptional, (1001)
"Very good location, very spacy rooms, clean, quite.. "
The price is $249
$331 total
includes taxes & fees
May 5 - May 6
Grande Colonial Hotel
Property grounds
Steps to the water on both sides!!
9.4 out of 10, Exceptional, (62)
"The property was super cute and functional for the size, perfect place to walk to Belmont park and the surrounding area with your loved one. Parking does suck but doable with a little patience. It's definitely a bustling corner but once it was Netflix & chill time, you couldn't hear the nightlife. We would absolutely stay again!"
Steps to the water on both sides!!
Fridge, microwave, oven, stovetop
The Hideaway of Silver Terrace
9.4 out of 10, Exceptional, (21)
"Cute layout and private. I enjoyed my stay."
The Hideaway of Silver Terrace
Outdoor pool, open 7:00 AM to 10:00 PM, sun loungers
Old Town Inn
2.5 star property
9.2 out of 10, Wonderful, (1327)
"I booked this two-night reservation for the second time for my senior parents, and they were pleased again. Friendly staff, comfy bed, and great location! "
The price is $175
$197 total
includes taxes & fees
May 5 - May 6
Old Town Inn
Pool
LOCATION! LOCATION! LOCATION! Heart of Mission Beach, Steps 2 Beach & Bay!
9.2 out of 10, Wonderful, (120)
"Clean and excellent location"
LOCATION! LOCATION! LOCATION! Heart of Mission Beach, Steps 2 Beach & Bay!
Property amenity
TownePlace Suites by Marriott San Diego Central
3.0 star property
9.0 out of 10, Wonderful, (343)
"This was a very comfortable hotel. The beds were wonderful and the hot breakfast was perfect. "
The price is $170
$192 total
includes taxes & fees
May 19 - May 20
TownePlace Suites by Marriott San Diego Central
Outdoor pool
Hampton Inn San Diego-Kearny Mesa
2.5 star property
9.0 out of 10, Wonderful, (1000)
"Smells so good. "
The price is $136
$153 total
includes taxes & fees
May 27 - May 28
Hampton Inn San Diego-Kearny Mesa
Outdoor dining
Steps to the water in two directions! Crown Point Peninsula in Mission Bay!
9.0 out of 10, Wonderful, (72)
"House was just what we needed and in a great location, just as advertised. Close to everything we wanted to do in San Diego. Owners were communicative and responsive. As at least one other reviewer mentioned, there was significant road noise, which was sometimes distracting. And although we adhered to quiet hours, the neighbor on one side seemed to be doing some work, so we heard music and power tools through the walls around 8 am several days. If the noise isn't a major problem for you, it was...
Steps to the water in two directions! Crown Point Peninsula in Mission Bay!
Balcony view
La Jolla Shores Hotel
3.0 star property
8.8 out of 10, Excellent, (1286)
"Service and staff are amazing. Nice stay a little issue with our first room but they moved us rightaway, Staff was ver accommodating. Thanks for a relaxing few days. "
The price is $339
$418 total
includes taxes & fees
May 7 - May 8
La Jolla Shores Hotel
Outdoor pool, open 9:00 AM to 10:00 PM, sun loungers
Residence Inn by Marriott San Diego Sorrento Mesa/Sorrento Valley
3.0 star property
8.8 out of 10, Excellent, (553)
"I was very happy with my stay. Kathy at the front desk when I checked in was very friendly and helpful. "
The price is $161
$182 total
includes taxes & fees
May 12 - May 13
Residence Inn by Marriott San Diego Sorrento Mesa/Sorrento Valley
BBQ/picnic area
Holiday Inn Express & Suites La Jolla – Windansea Beach, an IHG Hotel
2.5 star property
8.8 out of 10, Excellent, (1003)
"The hotel is older but well kept. The staff were friendly. I would stay here again."
The price is $169
$191 total
includes taxes & fees
May 12 - May 13
Holiday Inn Express & Suites La Jolla – Windansea Beach, an IHG Hotel
Aerial view
The Dana on Mission Bay
3.5 star property
8.6 out of 10, Excellent, (2406)
"The property was a little loud. But it was clean and easily accessible. While I prefer a hotel to a motel, this was good"
The price is $170
$192 total
includes taxes & fees
May 6 - May 7
The Dana on Mission Bay
Outdoor pool
Hampton Inn San Diego/Mission Valley
2.5 star property
8.6 out of 10, Excellent, (1001)
"The hotel was nice, breakfast was good. The shower was awesome "
The price is $159
$179 total
includes taxes & fees
May 5 - May 6
Hampton Inn San Diego/Mission Valley
Aerial view
Paradise Point Resort & Spa
4.0 star property
8.4 out of 10, Very Good, (1827)
"The staff were great and friendly! Our stay was perfect for our family as there was a lot to do on the resort and we had beach access. "
The price is $207
$278 total
includes taxes & fees
May 5 - May 6
Paradise Point Resort & Spa
Outdoor pool, open 9:00 AM to 9:00 PM, cabanas (surcharge)
San Diego Mission Bay Resort
4.0 star property
8.2 out of 10, Very Good, (1009)
"Check in was easy . The room was amazing . Pool service good . The food drinks and entertainment at the Plaza Del Sol was top notch . This is our second time at this resort and we would definitely return ."
The price is $215
$286 total
includes taxes & fees
May 27 - May 28
San Diego Mission Bay Resort
Premium 2 Queen beds with sofa sleeper ,ocean view- Non pet-friendly | Iron/ironing board, travel crib, free WiFi, bed sheets
Ocean Villa Inn
2.5 star property
8.2 out of 10, Very Good, (1003)
"We loved our ocean view room! It was really beautiful. I just didn’t like that we had to wait a few minutes for someone to check us into our hotel. "
The price is $98
$108 total
includes taxes & fees
May 6 - May 7
Ocean Villa Inn
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Hotels near Other San Diego Attractions

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North Cove Beach

Why not spend a lazy afternoon at North Cove Beach during your trip to San Diego? Experience the entertainment choices and acclaimed art scene in this walkable area.

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North Cove Beach

Frequently asked questions

What's the area like around Mission Bay?

Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 62 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Mission Bay?

Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.7 mi (1.2 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 1 mi (1.6 km) away.

How many hotels can I expect to find close to Mission Bay?

Expedia has 62 hotels and other accommodations within a mile from Mission Bay.

If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?

Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel’s cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.

Where can I learn more about changing or cancelling my trip in the area near Mission Bay?

For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.

What can I see and do near Mission Bay?

Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.

Recent reviews of Mission Bay hotels
Expedia verified reviews

Catamaran Resort and Spa

Catamaran Resort and Spa

5/5 Excellent
"Had a great stay! Staffed addressed a couple of minor issues immediately. Room had a very nice view of the bay. pool area was perfect, pool and hot tub were clean and quiet. "
A verified traveler stayed at Catamaran Resort and Spa
Posted 11 hours ago
Catamaran Resort and Spa