$106 Cheap Flights from Manila (MNL) to Kota Kinabalu (BKI)

View $106 flight on Sun, Mar 8, 2026Opens in a new window

Popular airlines from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)

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Cheap Flights from Manila to Kota Kinabalu (MNL-BKI)

Prices were available within the past 7 days and start at $106 for one-way flights and $227 for round trip, for the period specified. Prices and availability are subject to change. Additional terms apply.

Scoot
Fri, Jan 23 - Mon, Jan 26
MNL
Manila
BKI
Kota Kinabalu
$227 Roundtrip, found 2 days ago
$227
Roundtrip
found 2 days ago
Select Scoot flight, departing Fri, Jan 23 from Manila to Kota Kinabalu, returning Mon, Jan 26, priced at $227 found 2 days ago
Scoot
Fri, Jan 23 - Mon, Jan 26
MNL
Manila
BKI
Kota Kinabalu
$232 Roundtrip, found 2 days ago
$232
Roundtrip
found 2 days ago
Select Scoot flight, departing Fri, Jan 23 from Manila to Kota Kinabalu, returning Mon, Jan 26, priced at $232 found 2 days ago
Scoot
Fri, Jan 23 - Mon, Jan 26
MNL
Manila
BKI
Kota Kinabalu
$239 Roundtrip, found 2 days ago
$239
Roundtrip
found 2 days ago
Select Scoot flight, departing Fri, Jan 23 from Manila to Kota Kinabalu, returning Mon, Jan 26, priced at $239 found 2 days ago
Scoot
Tue, Mar 3 - Wed, Mar 11
MNL
Manila
BKI
Kota Kinabalu
$254 Roundtrip, found 2 days ago
$254
Roundtrip
found 2 days ago
Select Scoot flight, departing Tue, Mar 3 from Manila to Kota Kinabalu, returning Wed, Mar 11, priced at $254 found 2 days ago
Scoot
Wed, Mar 4 - Wed, Mar 11
MNL
Manila
BKI
Kota Kinabalu
$265 Roundtrip, found 2 days ago
$265
Roundtrip
found 2 days ago
Select Scoot flight, departing Wed, Mar 4 from Manila to Kota Kinabalu, returning Wed, Mar 11, priced at $265 found 2 days ago
Scoot
Wed, Mar 4 - Wed, Mar 11
MNL
Manila
BKI
Kota Kinabalu
$266 Roundtrip, found 2 days ago
$266
Roundtrip
found 2 days ago
Select Scoot flight, departing Wed, Mar 4 from Manila to Kota Kinabalu, returning Wed, Mar 11, priced at $266 found 2 days ago
Royal Brunei Airlines
Mon, Nov 3 - Fri, Nov 7
MNL
Manila
BKI
Kota Kinabalu
$296 Roundtrip, found 1 day ago
$296
Roundtrip
found 1 day ago
Select Royal Brunei Airlines flight, departing Mon, Nov 3 from Manila to Kota Kinabalu, returning Fri, Nov 7, priced at $296 found 1 day ago
Malaysia Airlines
Fri, Jan 23 - Mon, Jan 26
MNL
Manila
BKI
Kota Kinabalu
$312 Roundtrip, found 2 days ago
$312
Roundtrip
found 2 days ago
Select Malaysia Airlines flight, departing Fri, Jan 23 from Manila to Kota Kinabalu, returning Mon, Jan 26, priced at $312 found 2 days ago
China Southern Airlines
Sat, Oct 18 - Mon, Oct 20
MNL
Manila
BKI
Kota Kinabalu
$338 Roundtrip, found 18 hours ago
$338
Roundtrip
found 18 hours ago
Select China Southern Airlines flight, departing Sat, Oct 18 from Manila to Kota Kinabalu, returning Mon, Oct 20, priced at $338 found 18 hours ago
Singapore Airlines
Sat, Oct 25 - Wed, Oct 29
MNL
Manila
BKI
Kota Kinabalu
$358 Roundtrip, found 1 day ago
$358
Roundtrip
found 1 day ago
Select Singapore Airlines flight, departing Sat, Oct 25 from Manila to Kota Kinabalu, returning Wed, Oct 29, priced at $358 found 1 day ago

Find the cheapest month to fly from Manila (MNL) to Kota Kinabalu (BKI)

September is typically the cheapest month to fly

From $69 - $328 per traveler.

Alternative airports near Kota Kinabalu

Prices were available within the past 7 days. Prices and availability are subject to change.

Select flight to Kota Kinabalu Intl. BKI. Cheapest and Closest option available. Average driving time to city center is 9 minutes. Flights from $296
BKI
Kota Kinabalu Intl.
CheapestClosest
Average driving time to city center9 min
Flights from $296

Frequently asked questions

How much does a flight from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI) cost?
Grab a cheap one-way flight from $106 or cheap return flight from $227 from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI) with Expedia. Enter your travel dates and sort by "Price (lowest to highest)" to find our cheapest flight offers on this route.
What is the cheapest month to fly from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)?
January is the least expensive month to fly from MNL to BKI. Planning your trip for the off-season is often the key to finding better deals on flights.
Which airlines fly direct from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)?
When jetting out of Ninoy Aquino Intl. Airport (MNL), you can jump on a direct flight to Kota Kinabalu Intl. Airport (BKI) with Philippines AirAsia.
What is the cheapest airline that flies from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)?
To find the cheapest airline flying from MNL to BKI, use Expedia's filter tool. Tailor your search based on what matters most to you, such as preferred carriers and seat class. You can then sort your results by "Price (lowest to highest)" to see the most affordable options first.
How many flights per day from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)?
On average, Ninoy Aquino Intl. Airport (MNL) has 4 direct flights to Kota Kinabalu Intl. Airport (BKI) per week. For more choice, take advantage of Expedia's filters to look for flights with layovers. Squeeze in a quick visit to another location or simply break up your trip.
What are the most popular departure times for flights from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)?
The 4 PM departures from MNL to BKI are the busiest. Greater demand means you'll likely pay more for these departures. If you want to save money, choose a less crowded time to fly.
What day of the week has the most flights from MNL to BKI?
If you jet off on a Friday, you'll get the greatest range of choices for flights from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI).
What is the earliest flight from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)?
Ninoy Aquino Intl. Airport (MNL)'s earliest flight to Kota Kinabalu Intl. Airport (BKI) is at approximately 4:15PM UTC+8. With a total travel time of 2h 15m, you'll arrive at around 6:30PM UTC+8.
How long does it take to fly from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)?
Flights from MNL to BKI have an average travel time of 2 hours and 15 minutes. The total distance between these two airports is 680 mi.
What is the best time to fly from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)?
To touch down at Kota Kinabalu Intl. Airport (BKI) on schedule, book a flight that leaves Ninoy Aquino Intl. Airport (MNL) before 3 PM. The likelihood of cancellations is 22% higher, on average, for departures after this hour.**Most reliable time of the day and month to travel recommendation is based on January through August 2024 flight status data sourced from OAG's global flight data platform.
What airports do you fly into for Kota Kinabalu from Ninoy Aquino Intl. Airport (MNL)?
Kota Kinabalu Intl. Airport (BKI) is the only airport in Kota Kinabalu with direct flights from Ninoy Aquino Intl. Airport (MNL). Compare the options and discover affordable fares on Expedia.
Is it cheaper to buy a plane ticket from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI) last-minute?
Booking your flight from MNL to BKI shortly before your journey is typically more expensive. However, if there's some wiggle room with your itinerary, you could grab a cheap last-minute fare.
Is it cheaper to book a MNL to BKI flight and hotel package?
Booking a MNL to BKI flight and hotel package tends to be cheaper than booking separately. With Expedia, you can enjoy the ease of organizing your travels all in one place. Pick from our impressive range of accommodations and then add flights, activities and car rentals to your booking. Bundle it all together, and you could save hundreds of dollars.
Can I cancel or change the date of my flight from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)?
In most cases, you can cancel or modify your MNL to BKI flight. However, additional charges may apply, especially if your booking was made more than 24 hours ago. Double-check your itinerary for the airline's policies and fees on flight changes, or if you need more information, head to our Customer Service portal.

Travel information

Origin airport
Ninoy Aquino Intl.
Destination airport
Kota Kinabalu Intl.
Airlines serving
Cathay Pacific, China Southern Airlines, Malaysia Airlines, Philippine Airlines, Royal Brunei Airlines, Scoot, Singapore Airlines
Roundtrip price
$227
Distance
681 mi
Average flight time
2 hours 10 mins

Book with confidence

Manila to Kota Kinabalu Flights

The cheapest times to fly from Manila to Kota Kinabalu

On average, Thursday can be the cheapest time to fly, according to data from the Airlines Reporting Corporation (ARC), one of the world's biggest databases for global airline sales. The data reveals that you could save up to 16% by flying on a Thursday—the cheapest day to travel on average—instead of a Sunday—the most expensive. Some of the most affordable flights from Manila to Kota Kinabalu are during the month of January. You can find some of the cheapest flights from Manila to Kota Kinabalu with Expedia's search tool and vast selection of airlines.

 

The best time to book a flight from Manila to Kota Kinabalu

Sunday is one of the best days to book for cheap flights from Manila to Kota Kinabalu: Tickets reserved on a Sunday cost between 6% and 13% less than those reserved on a Friday, according to ARC data. The data also suggests booking early can also lead to cheaper airfares. You could save 24% by buying your tickets for domestic flights at least a month in advance and 10% by booking international flights 2 months in advance.

 

How to find cheap round-trip tickets from Manila to Kota Kinabalu

Being flexible with your dates and using Expedia's Price Drop Protection and Price Tracking features are some of the best ways of finding a cheap ticket from Manila to Kota Kinabalu in 2025. You can also book with separate airlines for your outbound and return journeys, from $106 one-way. Expedia also offers Price Drop Protection, so if the cost of your airfare goes down after booking, you'll receive a credit for the difference*. This is available for a small fee, and is free to One Key Gold and Platinum tier members.

 

Expedia's Price Tracking feature means you can stay on top of airfares without manually checking every day. It sends you automated price alerts for cheap Manila to Kota Kinabalu flights and uses historical data to indicate when the best time to book is. Download Expedia's free app to activate this handy tool in a few easy taps.

 

You could also save big by booking one of Expedia's vacation packages. Bundling together your Manila to Kota Kinabalu airfare with your accommodations and car rental is often cheaper than booking everything separately. There’s also One Key, Expedia's generous rewards program. Join for free and you could earn One Key cash on most bookings to save on future adventures.

 

*Terms apply.

 

Disclaimer: ARC The statistics are based on average round-trip ticket prices between January and August 2023. The percentages you see are averages.

 

Manila to Kota Kinabalu Flights

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*Available to One Key members.