Top 10 Hotels in Ayios Thomas (from $46) 2026 - Competitive Prices

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Our top choices for Ayios Thomas hotels

1. Traditional Cretan Houses

Heraklion

"We loved our stay at this beautiful house. The location is excellent, making it very easy to drive to either side of Crete. Our host was fantastic and very friendly, helpful, and highly responsive. She also gave us great recommendations for places to visit around the island. The house itself is lovely and equipped with basic supplies for cooking in the evening, which was mostly suitable for our needs. We would definitely stay here again!"

Callum

$55 nightly

Jul 29 - Jul 30

Total with taxes and fees

2. Idi Hotel

Faistos

Erin

$83 nightly

Jul 27 - Jul 28

Total with taxes and fees

Seasonal outdoor pool, an infinity pool, pool umbrellas, sun loungers

3. Aetovigla Traditional Guest Houses

Malevizi

Monica

$125 nightly

Aug 25 - Aug 26

Total with taxes and fees

4. Manili Suites & Villas, an SLH Hotel

Archanes-Asterousia

David

$163 nightly

Aug 12 - Aug 13

Total with taxes and fees

5. Sofia Hotel

Nea Alikarnassos

Jonel

$89 nightly

Aug 10 - Aug 11

Total with taxes and fees

6. Marble Luxury Suites

Heraklion

Mike

$104 nightly

Jul 27 - Jul 28

Total with taxes and fees

Executive Suite | Frette Italian sheets, premium bedding, Tempur-Pedic beds, in-room safe

7. Stay 365 Heraklion Apart Hotel

Heraklion

Luis

$70 nightly

Jul 28 - Jul 29

Total with taxes and fees

8. Eliathos Hillside Retreat

Archanes-Asterousia

louise

$126 nightly

Jul 27 - Jul 28

Total with taxes and fees

Double or Twin Room | Minibar, iron/ironing board (on request), WiFi (free), bed sheets

9. Asterion Hotel

Nea Alikarnassos

LEIGHTON

$95 nightly

Jul 28 - Jul 29

Total with taxes and fees

10. Chapter 02 Gallery Suites

Heraklion

Kimberly

$110 nightly

Aug 19 - Aug 20

Total with taxes and fees

11. Marvel Deluxe Rooms

Nea Alikarnassos

Michael

$97 nightly

Jul 29 - Jul 30

Total with taxes and fees

In-room safe, desk, soundproofing, iron/ironing board (on request)

12. Karteros Hotel

Hersonissos

Pantelis

$95 nightly

Aug 7 - Aug 8

Total with taxes and fees

13. GDM Megaron Historical Monument Hotel

Heraklion

Douglas

$155 nightly

Aug 4 - Aug 5

Total with taxes and fees

Superior Double or Twin Room, City View | In-room safe, desk, laptop workspace, blackout drapes

14. Anesea City

Nea Alikarnassos

Matthew

$123 nightly

Jul 27 - Jul 28

Total with taxes and fees

Deluxe Suite | Egyptian cotton sheets, premium bedding, down comforters, pillowtop beds

15. Artree Suites

Heraklion

Francis

$93 nightly

Jul 27 - Jul 28

Total with taxes and fees

16. Galaxy Hotel Iraklio

Heraklion

Anna

$139 nightly

Jul 27 - Jul 28

Total with taxes and fees

17. LAVRIS City Suites

Heraklion

Whitney

$108 nightly

Jul 28 - Jul 29

Total with taxes and fees

Deluxe Studio | Premium bedding, in-room safe, desk, laptop workspace

18. Pavo Art Hotel

Heraklion

Sandra

$86 nightly

Jul 28 - Jul 29

Total with taxes and fees

19. Lato Boutique Hotel

Heraklion

george

$97 nightly

Jul 27 - Jul 28

Total with taxes and fees

20. Nuovo Crete By Sea - Adults Only

Malevizi

"The room we stayed in was cleaned everyday and towels and ( coffee pods for the machine) replaced. I was initially slightly dubious about using the sister hotel facilities. But I can assure you it is literally 2 mins away, on a private beach. They have a lovely pool and the most amazing staff. We came for just 5 days and it was just so wonderful to relax and enjoy the surroundings and food and staff’s kindness."

Louise

$78 nightly

Jul 29 - Jul 30

Total with taxes and fees

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Top Ayios Thomas Hotel Reviews

Peninsula Resort & Spa - All Inclusive

10/10 Excellent

"View and location are excellent. Staff very helpful. Our room was a little dated but your only in it to sleep. Morning sunrise over sea was beautiful. Platform next to sea to access for swimming and snorkel was excellent."

Aquila Atlantis Hotel

8/10 Good

"The highlights of the stay were the excellent breakfast buffet. It was really impressive. The more the guests, the better the offerings. We were half board so had dinner as well. There weren’t enough guests on half board so there wasn’t a buffet but the hotel allowed us to order anything on the menu. The drinks on the last night were comped which was quite nice. Stella from F&B was a standout. She was incredibly welcoming and helpful and very understanding, helping us get comfortable at the hotel. The other staff member who helped us was the young man at the door. He helped create a great impression for the first time, we didn’t see him much so I couldn’t catch his name. The other staff especially front desk really lacked hospitality and bedside manner. Requests to answer questions or open the garage were met with “what!?” as though we spouted blasphemy. Very strange and uninviting. The hotel parking is convenient but kind of a pain to get in — you have to send someone up to front desk to have them open the gate while you hover there blocking the street. There are two pools and I would rate them as satisfactory because they are very small. The location is excellent. Just adjacent to the museum and our room had a wonderful view of the port and the water. We enjoyed our stay there."

Sofia Hotel

10/10 Excellent

"I had a wonderful stay at Sofia's Hotel. It's incredibly convenient, located just a 10-minute walk from the airport. You can also take Bus #6 for only €1–2, which drops you off very close to the hotel. I chose to walk, and it was an easy, pleasant walk. The service was exceptional from the moment I arrived. The front desk staff were friendly, welcoming, and always willing to help with any questions. The hotel has a nice pool and an on-site restaurant, and the breakfast was delicious with plenty of options. The room was clean, the Wi-Fi worked well throughout my stay, and the price was excellent for an overnight stay. If you're looking for a comfortable, affordable, and convenient hotel near the airport, I highly recommend Sofia's Hotel."

Pnoe Breathing Life (Adults Only)

10/10 Excellent

"Amazing property! I was pleasantly surprised with a complimentary room upgrade upon arrival. From the moment I stepped onto the grounds, every staff member was welcoming, personable, and eager to help. My room was incredible, featuring a private pool, steam room, a 360° TV that doubles as a mirror, and excellent Bluetooth speakers. The amenities throughout the property were equally impressive, including the well-equipped gym, fantastic restaurant, and beautiful pool with floating lounge chairs. This is truly a state-of-the-art property with exceptional service. Its location is another major plus—just six minutes from Heraklion Airport, making it incredibly convenient. I will definitely be back and highly recommend it to anyone visiting the area."

More cheap stays in Ayios Thomas

Matala Dimitris Villa

Matala Faistos Crete

$39 nightly

$46 total

Jul 31 - Aug 1

Total with taxes and fees

7.6/10 Good! (182 reviews)

Hotels in Ayios Thomas with star-rating

Frequently asked questions

What is the best area to stay in Ayios Thomas?

The best area to stay in Ayios Thomas is within the village center itself, particularly around the main square and the surrounding streets.

This central part of Ayios Thomas offers a pleasant and convenient experience, with traditional Cretan architecture and easy access to local amenities. The village is small and walkable, making it simple to navigate on foot. You'll find a few local tavernas serving authentic cuisine and small shops for essentials.

For couples seeking a tranquil getaway, staying in the village center is ideal. It provides a peaceful retreat from more bustling tourist areas, allowing for relaxed evenings and a taste of local life.

When is the best time to go to Ayios Thomas?

The best time to visit Ayios Thomas is during the shoulder seasons of April to early June and September to October.

During these months, the weather is pleasantly warm, ideal for exploring the natural beauty of the region and enjoying outdoor activities without the peak summer crowds. You'll find comfortable temperatures for hiking the scenic trails, visiting local olive groves, or simply relaxing in the peaceful surroundings. This period offers a more relaxed experience for travelers seeking tranquility and natural beauty.

For couples looking for a romantic getaway, these shoulder seasons provide a serene atmosphere. The mild weather allows for leisurely strolls through the countryside, enjoying private dinners at local tavernas, and experiencing the slower pace of life in this charming Cretan village.

Can I cancel my hotel reservation on Expedia?

You can cancel your hotel reservation on Expedia, though it depends on the cancellation policy of your booking. Most bookings are refundable if canceled within 24-48 hours of the scheduled arrival. Be sure to check your booking confirmation for the exact cancellation policy. If free cancellation is available, you can cancel directly through your Expedia account by logging in, going to "My Trips", and selecting your reservation. To find flexible deals, filter your search by "Fully refundable property" for hotels in Ayios Thomas.

How can I save on a Ayios Thomas hotel booking with Expedia?

With Expedia, you earn OneKeyCash™* on eligible Ayios Thomas hotel bookings for every dollar you spend – just join our One Key™ travel rewards program to get started. It's free to join, and you'll unlock our lowest Member Prices as soon as you're signed in. On top of this, you could also save significantly by bundling your hotel and flights together on Expedia.

*Excludes taxes and fees. OneKeyCash is not redeemable for cash and can only be used on Expedia, Hotels.com and Vrbo.

How much is the nightly rate at a Ayios Thomas hotel?

Prices for hotels in Ayios Thomas often vary, but you can find a great deal from $46 on Expedia. All sorts of factors affect price, such as the time of year or the days of the week you choose for your stay. Find the best deals by being flexible with your dates, and sort search results by "Price: low to high" for the cheapest rate.

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Our top choices for Ayios Thomas hotels

1. Traditional Cretan Houses

2. Idi Hotel

3. Aetovigla Traditional Guest Houses

4. Manili Suites & Villas, an SLH Hotel

5. Sofia Hotel

6. Marble Luxury Suites

7. Stay 365 Heraklion Apart Hotel

8. Eliathos Hillside Retreat

9. Asterion Hotel

10. Chapter 02 Gallery Suites

11. Marvel Deluxe Rooms

12. Karteros Hotel

13. GDM Megaron Historical Monument Hotel

14. Anesea City

15. Artree Suites

16. Galaxy Hotel Iraklio

17. LAVRIS City Suites

18. Pavo Art Hotel

19. Lato Boutique Hotel

20. Nuovo Crete By Sea - Adults Only

Top Ayios Thomas Hotel Reviews

Peninsula Resort & Spa - All Inclusive

More cheap stays in Ayios Thomas

Matala Dimitris Villa

Hotels in Ayios Thomas with star-rating

Frequently asked questions

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