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Sep 8 - Sep 9
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Sep 9 - Sep 10
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Sep 11 - Sep 13
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Sep 18 - Sep 20

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Our top choices for Ayios Thomas hotels

1. Traditional Cretan Houses

Traditional Cretan Houses
Heraklion
Canada
Anne-Sophie
$53 nightly
$61 total
Oct 9 - Oct 10
Total with taxes and fees
Traditional Cretan Houses

2. Idi Hotel

Idi Hotel
Faistos
United States
Erin
$76 nightly
$87 total
Sep 21 - Sep 22
Total with taxes and fees
Idi Hotel

3. Aetovigla Traditional Guest Houses

Aetovigla Traditional Guest Houses
Malevizi
United Kingdom
Monica
$95 nightly
$111 total
Oct 9 - Oct 10
Total with taxes and fees
Aetovigla Traditional Guest Houses

4. Manili Boutique Suites & Villas, an SLH Hotel

Manili Boutique Suites & Villas, an SLH Hotel
Archanes-Asterousia
Denmark
Frederik
$105 nightly
$128 total
Oct 8 - Oct 9
Total with taxes and fees
Manili Boutique Suites & Villas, an SLH Hotel

5. Chapter 02 Gallery Suites

Chapter 02 Gallery Suites
Heraklion
United States
Kimberly
$82 nightly
$96 total
Oct 9 - Oct 10
Total with taxes and fees
Chapter 02 Gallery Suites

6. Sofia Hotel

Sofia Hotel
Nea Alikarnassos
United Kingdom
Alan
$78 nightly
$95 total
Sep 13 - Sep 14
Total with taxes and fees
Sofia Hotel

7. Eliathos Hillside Retreat

Eliathos Hillside Retreat
Archanes-Asterousia
United Kingdom
louise
$104 nightly
$120 total
Sep 21 - Sep 22
Total with taxes and fees
Eliathos Hillside Retreat

8. Karteros Hotel

Karteros Hotel
Hersonissos
United Kingdom
Pantelis
$58 nightly
$72 total
Oct 9 - Oct 10
Total with taxes and fees
Karteros Hotel

9. Stay 365 Heraklion Apart Hotel

Stay 365 Heraklion Apart Hotel
Heraklion
Greece
Ioannis
$76 nightly
$89 total
Oct 7 - Oct 8
Total with taxes and fees
Stay 365 Heraklion Apart Hotel

10. Asterion Hotel

Asterion Hotel
Nea Alikarnassos
United Kingdom
Antreas
$78 nightly
$95 total
Oct 8 - Oct 9
Total with taxes and fees
Asterion Hotel

11. Marvel Deluxe Rooms

Marvel Deluxe Rooms
Nea Alikarnassos
Germany
Daniela
$77 nightly
$90 total
Sep 30 - Oct 1
Total with taxes and fees
Marvel Deluxe Rooms

12. Artree Suites

Artree Suites
Heraklion
Canada
ChunHui
$92 nightly
$107 total
Oct 9 - Oct 10
Total with taxes and fees
Artree Suites

13. Kronos Hotel

Kronos Hotel
Heraklion
United States
Tayfun
$81 nightly
$94 total
Oct 1 - Oct 2
Total with taxes and fees
Kronos Hotel

14. Lato Boutique Hotel

Lato Boutique Hotel
Heraklion
United States
ISTVAN
$83 nightly
$106 total
Sep 13 - Sep 14
Total with taxes and fees
Lato Boutique Hotel

15. Anesea City

Anesea City
Nea Alikarnassos
Canada
George
$131 nightly
$161 total
Sep 28 - Sep 29
Total with taxes and fees
Anesea City

16. Galaxy Hotel Iraklio

Galaxy Hotel Iraklio
Heraklion
Canada
Andre
$111 nightly
$144 total
Sep 28 - Sep 29
Total with taxes and fees
Galaxy Hotel Iraklio

17. Yianna Caravel Suites "by Checkin" adults only

Yianna Caravel Suites "by Checkin" adults only
Malevizi
United States
Edan
$109 nightly
$135 total
Oct 8 - Oct 9
Total with taxes and fees
Yianna Caravel Suites "by Checkin" adults only

18. Porta Medina Boutique Hotel - Adults Only

Porta Medina Boutique Hotel - Adults Only
Heraklion
Canada
Alexandre
$92 nightly
$107 total
Sep 19 - Sep 20
Total with taxes and fees
Porta Medina Boutique Hotel - Adults Only

19. Atrion Hotel

Atrion Hotel
Heraklion
United States
kevin
$74 nightly
$90 total
Oct 7 - Oct 8
Total with taxes and fees
Atrion Hotel

20. 3 Pines Design Living

3 Pines Design Living
Heraklion
Canada
Todd
$98 nightly
$114 total
Oct 6 - Oct 7
Total with taxes and fees
3 Pines Design Living
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Top Ayios Thomas Hotel Reviews

GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel

10/10 Excellent
"À distance de marche des attrait touristique et du port. Piscine sur le toit très bien mais froide."
Pierre 1-night trip
Posted 4 hours ago
GDM Megaron Historical Monument Hotel
Aquila Atlantis Hotel

Aquila Atlantis Hotel

10/10 Excellent
"Hotel was beautiful and in a great location to the port, old town etc. Also had free parking which was a nice bonus. We spent a lot of time in the pool which was much needed respite from the heat. Only items to improve here was a bit of a disconnect between the day reception staff and the night reception staff re: our request for late checkout. Night staff said yes, then the next day, the day staff said no - so it made us scramble last minute to pack everything up. Otherwise - a great stay and would recommend!"
Rishi 2-night trip
Posted 5 hours ago
Aquila Atlantis Hotel
Knossos Beach Bungalows Suites Resort & Spa

Knossos Beach Bungalows Suites Resort & Spa

10/10 Excellent
"The hotel restaurant and cleaning staff were amazing—friendly, helpful, and welcoming throughout our stay. Unfortunately, the front desk girls staff were not very welcoming, and some information and arrangements were not handled properly. For example, we received a card for a complimentary cocktail at 6 PM, even though they knew we had a 6 AM early checkout the next morning. If you enjoy a resort-style hotel where you can relax on the property, this is a good choice. However, there isn’t much within walking distance, so it’s not ideal if you want nearby shops, restaurants, or attractions. Overall, a nice resort with fantastic restaurant and housekeeping staff, but the girls at front desk experience could definitely be improved."
Gian 5-night trip
Posted 7 hours ago
Knossos Beach Bungalows Suites Resort & Spa
Peninsula Resort & Spa - All Inclusive

Peninsula Resort & Spa - All Inclusive

10/10 Excellent
"The staff was accommodating if you didn’t speak their language, they had interpreted for you. The rooms were very clean. The spa was excellent. I have nothing to compare with yet. I had a good time I would visit again."
Paula 5-night trip
Posted 7 hours ago
Peninsula Resort & Spa - All Inclusive
Mirabello Hotel

Mirabello Hotel

8/10 Good
"Good without being spectacular. this is literally a 3 star hotel and does the job for a short stay or a convenient location stay. Located about 2 blocks from the main street it has good access to most things around there to walk to. The room was very compact, balcony would be luck to be 1m wide. The aircon was great, the water pressure was good, Vanity is so tiny and has a shelf placed directly above it, making it difficult to shave or clean your teeth. the shower is small but expected in Italy Hotels. Staff at reception were helpful on the few occaisions i interated with them. There was only a hand held shower head, and no wall mount which makes it difficult to enjoy a proper shower. Bed was quite firm and was only made up with a bottom sheet, the top sheet had to be put on yourself if you wanted it. Knowing what to expect, it was cheap and serviced my needs so would probably use again if I stayed in Heraklion again."
Matt 2-night trip
Posted 8 hours ago
Mirabello Hotel
Sofia Hotel

Sofia Hotel

8/10 Good
"Good for a 1 night stay if you need easy access to the airport. Recommend ear plugs as planes are very loud throughout the night"
Matthew 1-night trip
Posted 1 day ago
Sofia Hotel
Infinity City Boutique Hotel

Infinity City Boutique Hotel

10/10 Excellent
"Excellent hotel within walking distance of the port for our short stop over in Heraklion . Staff very helpful and allowed us to have early breakfast before our ferry ."
Caroline 1-night trip
Posted 3 days ago
Infinity City Boutique Hotel
Olive Green Hotel

Olive Green Hotel

10/10 Excellent
"Excellent déjeuner"
Alain 5-night trip
Posted 3 days ago
Olive Green Hotel
Ibis Styles Heraklion Central

Ibis Styles Heraklion Central

10/10 Excellent
"Great hotel close to several restaurants and to the port."
Claudia 1-night trip
Posted 4 days ago
Ibis Styles Heraklion Central

More cheap stays in Ayios Thomas

Mirabello Hotel

Mirabello Hotel

20 Theotokopoulou St Heraklion Crete Island
$55 nightly
$65 total
Oct 5 - Oct 6
Total with taxes and fees
8.6/10 Excellent! (403 reviews)
Mirabello Hotel
Thalia Bloom Villa Apartments

Thalia Bloom Villa Apartments

Marikas Kapsi Malevizi Heraklion
$66 nightly
$77 total
Oct 9 - Oct 10
Total with taxes and fees
9.4/10 Exceptional! (30 reviews)
Thalia Bloom Villa Apartments
Idi Hotel

Idi Hotel

Zaros Faistos Crete
$76 nightly
$87 total
Sep 21 - Sep 22
Total with taxes and fees
9.2/10 Wonderful! (85 reviews)
Idi Hotel
El Greco Hotel

El Greco Hotel

4, Street 1821 Heraklion Crete Island
$78 nightly
$91 total
Oct 3 - Oct 4
Total with taxes and fees
7.4/10 Good! (815 reviews)
El Greco Hotel
Kronos Hotel

Kronos Hotel

2, Sof. Venizelou Str. and M. Agarathou Heraklion Crete Island
$81 nightly
$94 total
Oct 1 - Oct 2
Total with taxes and fees
8.8/10 Excellent! (645 reviews)
Kronos Hotel
Pela Mare Hotel

Pela Mare Hotel

Agia Pelagia Malevizi Crete Island
$96 nightly
$111 total
Oct 5 - Oct 6
Total with taxes and fees
Pela Mare Hotel

Hotels in Ayios Thomas with star-rating

Frequently asked questions

What is the best area to stay in Ayios Thomas?
The best area to stay in Ayios Thomas is within the village center itself, particularly around the main square and the surrounding streets.This central part of Ayios Thomas offers a pleasant and convenient experience, with traditional Cretan architecture and easy access to local amenities. The village is small and walkable, making it simple to navigate on foot. You'll find a few local tavernas serving authentic cuisine and small shops for essentials.For couples seeking a tranquil getaway, staying in the village center is ideal. It provides a peaceful retreat from more bustling tourist areas, allowing for relaxed evenings and a taste of local life.
When is the best time to go to Ayios Thomas?
The best time to visit Ayios Thomas is during the shoulder seasons of April to early June and September to October.During these months, the weather is pleasantly warm, ideal for exploring the natural beauty of the region and enjoying outdoor activities without the peak summer crowds. You'll find comfortable temperatures for hiking the scenic trails, visiting local olive groves, or simply relaxing in the peaceful surroundings. This period offers a more relaxed experience for travelers seeking tranquility and natural beauty.For couples looking for a romantic getaway, these shoulder seasons provide a serene atmosphere. The mild weather allows for leisurely strolls through the countryside, enjoying private dinners at local tavernas, and experiencing the slower pace of life in this charming Cretan village.
Can I cancel my hotel reservation on Expedia?
You can cancel your hotel reservation on Expedia, though it depends on the cancellation policy of your booking. Most bookings are refundable if canceled within 24-48 hours of the scheduled arrival. Be sure to check your booking confirmation for the exact cancellation policy. If free cancellation is available, you can cancel directly through your Expedia account by logging in, going to "My Trips", and selecting your reservation. To find flexible deals, filter your search by "Fully refundable property" for hotels in Ayios Thomas.
How can I save on a Ayios Thomas hotel booking with Expedia?
With Expedia, you earn OneKeyCash™* on eligible Ayios Thomas hotel bookings for every dollar you spend – just join our One Key™ travel rewards program to get started. It's free to join, and you'll unlock our lowest Member Prices as soon as you're signed in. On top of this, you could also save significantly by bundling your hotel and flights together on Expedia.*Excludes taxes and fees. OneKeyCash is not redeemable for cash and can only be used on Expedia, Hotels.com and Vrbo.
How much is the nightly rate at a Ayios Thomas hotel?
Prices for hotels in Ayios Thomas often vary, but you can find a great deal from $39 on Expedia. All sorts of factors affect price, such as the time of year or the days of the week you choose for your stay. Find the best deals by being flexible with your dates, and sort search results by "Price: low to high" for the cheapest rate.

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