$239 Cheap Flights from Cebu (CEB) to Kota Kinabalu (BKI)

View $239 flight on Mon, Mar 16, 2026Opens in a new window

Popular airlines from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI)

  • notification illustration

    Be in the know

    Get alerts if flight prices drop or rise*
  • deals illustration

    Book smarter

    Save up to 30% on select hotels after you book a flight*
  • trophy illustration

    Earn twice

    Earn your airline miles on top of our OneKeyCash
    Learn about One Key

Cheap Flights from Cebu to Kota Kinabalu (CEB-BKI)

Prices were available within the past 7 days and start at $239 for one-way flights and $461 for round trip, for the period specified. Prices and availability are subject to change. Additional terms apply.

Philippine Airlines
Sat, Nov 15 - Sat, Nov 22
CEB
Cebu City
BKI
Kota Kinabalu
$461 Roundtrip, found 3 days ago
$461
Roundtrip
found 3 days ago
Select Philippine Airlines flight, departing Sat, Nov 15 from Cebu City to Kota Kinabalu, returning Sat, Nov 22, priced at $461 found 3 days ago
Cathay Pacific
Wed, Nov 5 - Wed, Nov 12
CEB
Cebu City
BKI
Kota Kinabalu
$493 Roundtrip, found 2 days ago
$493
Roundtrip
found 2 days ago
Select Cathay Pacific flight, departing Wed, Nov 5 from Cebu City to Kota Kinabalu, returning Wed, Nov 12, priced at $493 found 2 days ago
Philippine Airlines
Sat, Nov 15 - Tue, Nov 18
CEB
Cebu City
BKI
Kota Kinabalu
$494 Roundtrip, found 3 days ago
$494
Roundtrip
found 3 days ago
Select Philippine Airlines flight, departing Sat, Nov 15 from Cebu City to Kota Kinabalu, returning Tue, Nov 18, priced at $494 found 3 days ago
Scoot
Wed, Nov 12 - Wed, Nov 19
CEB
Cebu City
BKI
Kota Kinabalu
$500 Roundtrip, found 3 days ago
$500
Roundtrip
found 3 days ago
Select Scoot flight, departing Wed, Nov 12 from Cebu City to Kota Kinabalu, returning Wed, Nov 19, priced at $500 found 3 days ago
Scoot
Wed, Nov 12 - Sun, Nov 23
CEB
Cebu City
BKI
Kota Kinabalu
$511 Roundtrip, found 3 days ago
$511
Roundtrip
found 3 days ago
Select Scoot flight, departing Wed, Nov 12 from Cebu City to Kota Kinabalu, returning Sun, Nov 23, priced at $511 found 3 days ago
Singapore Airlines
Mon, Nov 10 - Fri, Nov 14
CEB
Cebu City
BKI
Kota Kinabalu
$513 Roundtrip, found 2 days ago
$513
Roundtrip
found 2 days ago
Select Singapore Airlines flight, departing Mon, Nov 10 from Cebu City to Kota Kinabalu, returning Fri, Nov 14, priced at $513 found 2 days ago
Philippine Airlines
Sat, Nov 15 - Wed, Nov 19
CEB
Cebu City
BKI
Kota Kinabalu
$518 Roundtrip, found 3 days ago
$518
Roundtrip
found 3 days ago
Select Philippine Airlines flight, departing Sat, Nov 15 from Cebu City to Kota Kinabalu, returning Wed, Nov 19, priced at $518 found 3 days ago
Scoot
Wed, Nov 12 - Mon, Nov 17
CEB
Cebu City
BKI
Kota Kinabalu
$524 Roundtrip, found 3 days ago
$524
Roundtrip
found 3 days ago
Select Scoot flight, departing Wed, Nov 12 from Cebu City to Kota Kinabalu, returning Mon, Nov 17, priced at $524 found 3 days ago
Philippine Airlines
Wed, Nov 12 - Tue, Nov 18
CEB
Cebu City
BKI
Kota Kinabalu
$527 Roundtrip, found 3 days ago
$527
Roundtrip
found 3 days ago
Select Philippine Airlines flight, departing Wed, Nov 12 from Cebu City to Kota Kinabalu, returning Tue, Nov 18, priced at $527 found 3 days ago
Jeju Air
Thu, Nov 13 - Mon, Nov 17
CEB
Cebu City
BKI
Kota Kinabalu
$539 Roundtrip, found 3 days ago
$539
Roundtrip
found 3 days ago
Select Jeju Air flight, departing Thu, Nov 13 from Cebu City to Kota Kinabalu, returning Mon, Nov 17, priced at $539 found 3 days ago

Frequently asked questions

How much does a flight from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI) cost?
Secure a cheap one-way flight from $239 or cheap return flight from $461 from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI) with Expedia. Enter your travel dates and sort by "Price (lowest to highest)" to see our cheapest flight offers on this route.
What is the cheapest month to fly from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI)?
November is the least expensive month to fly from CEB to BKI. Timing your trip outside of the busy season is often the key to finding better deals on flights.
What is the cheapest airline that flies from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI)?
Use the filters on Expedia to compare different airlines and find the most affordable carrier that'll take you from CEB to BKI. Then, sort your results by "Price (lowest to highest)" to snag the best deal available.
How many flights per day from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI)?
Nonstop flights from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI) aren't available daily, so you'll need to take a flight with a layover. Explore your options with our filter tool. Enter your travel dates and select either "1 Stop" or "2+ Stops."
What day of the week has the most flights from CEB to BKI?
You'll generally find Tuesday the quietest day for flights, while Fridays tend to be the busiest.* However this can change from season to season and during public holidays or peak travel times.*Busiest/quietest day to travel is based on Expedia flight demand through January to December 2024.
What is the best time to fly from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI)?
To avoid potential delays on the Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI) route, aim to travel before 3 PM. Later departures are 22% more likely to be canceled.**Most reliable time of the day and month to travel recommendation is based on January through August 2024 flight status data sourced from OAG's global flight data platform.
Is it cheaper to buy a plane ticket from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI) last-minute?
Booking your plane ticket from CEB to BKI right before your trip is generally more expensive. But if there's some wiggle room with your travel dates and times, you could grab a cheap last-minute fare.
Is it cheaper to book a CEB to BKI flight and hotel package?
You'll generally save money by booking a CEB to BKI flight and hotel package compared to booking separately. In fact, travelers could save hundreds of dollars by bundling with Expedia. And it's simple to manage it all in one convenient place. After selecting your preferred flights and accommodations, consider other add-ons like tours, activities and car rentals.
Can I cancel or change the date of my flight from Mactan - Cebu Intl. Airport (CEB) to Kota Kinabalu Intl. Airport (BKI)?
You can usually cancel or reschedule your CEB to BKI flight. However, if the booking was made more than 24 hours ago, additional fees may apply. Check your airline's policies in your itinerary to see what changes are allowed and if any costs are involved. You'll also find more details on our Customer Service portal.

Travel information

Origin airport
Mactan - Cebu Intl.
Destination airport
Kota Kinabalu Intl.
Roundtrip price
$460
Distance
621 mi

Book with confidence

Cebu to Kota Kinabalu Flights

The cheapest times to fly from Cebu to Kota Kinabalu

On average, Thursday can be the cheapest time to fly, according to data from the Airlines Reporting Corporation (ARC), one of the world's biggest databases for global airline sales. The data reveals that you could save up to 16% by flying on a Thursday—the cheapest day to travel on average—instead of a Sunday—the most expensive. Some of the most affordable flights from Cebu to Kota Kinabalu are during the month of November. You can find some of the cheapest flights from Cebu to Kota Kinabalu with Expedia's search tool and vast selection of airlines.

 

The best time to book a flight from Cebu to Kota Kinabalu

Sunday is one of the best days to book for cheap flights from Cebu to Kota Kinabalu: Tickets reserved on a Sunday cost between 6% and 13% less than those reserved on a Friday, according to ARC data. The data also suggests booking early can also lead to cheaper airfares. You could save 24% by buying your tickets for domestic flights at least a month in advance and 10% by booking international flights 2 months in advance.

 

How to find cheap round-trip tickets from Cebu to Kota Kinabalu

Being flexible with your dates and using Expedia's Price Drop Protection and Price Tracking features are some of the best ways of finding a cheap ticket from Cebu to Kota Kinabalu in 2025. You can also book with separate airlines for your outbound and return journeys, from $239 one-way. Expedia also offers Price Drop Protection, so if the cost of your airfare goes down after booking, you'll receive a credit for the difference*. This is available for a small fee, and is free to One Key Gold and Platinum tier members.

 

Expedia's Price Tracking feature means you can stay on top of airfares without manually checking every day. It sends you automated price alerts for cheap Cebu to Kota Kinabalu flights and uses historical data to indicate when the best time to book is. Download Expedia's free app to activate this handy tool in a few easy taps.

 

You could also save big by booking one of Expedia's vacation packages. Bundling together your Cebu to Kota Kinabalu airfare with your accommodations and car rental is often cheaper than booking everything separately. There’s also One Key, Expedia's generous rewards program. Join for free and you could earn One Key cash on most bookings to save on future adventures.

 

*Terms apply.

 

Disclaimer: ARC The statistics are based on average round-trip ticket prices between January and August 2023. The percentages you see are averages.

 

Cebu to Kota Kinabalu Flights

Explore a world of travel with Expedia

*Available to One Key members.