Search San Juan Island Cottages

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Check prices for these dates

Next weekend
Dec 26 - Dec 28
In two weeks
Jan 2 - Jan 4
In one month
Jan 16 - Jan 18
In two months
Feb 13 - Feb 15

Our top choices for San Juan Island cottages

Terrace/patio
Cottage by the Sea Su

Cottage in Anacortes

Cottage by the Sea Su
9.6 out of 10, Exceptional, (149)
"Lovely property, amazing hosts, very clean"
United States
Heather M.
$252 nightly
The price is $276
Jan 4 - Jan 5, 2026
Total with taxes and fees
Cottage by the Sea Su
Aerial view
@ Marbella Lane Wave HS W/ev Charger, Oceanfront!

Cottage in Oak Harbor

@ Marbella Lane Wave HS W/ev Charger, Oceanfront!
3.0 star property
$454 nightly
The price is $498
Jan 6 - Jan 7, 2026
Total with taxes and fees
@ Marbella Lane Wave HS W/ev Charger, Oceanfront!
Exterior
Cozy cottage, outdoor space & convenient location

Cottage in Anacortes

Cozy cottage, outdoor space & convenient location
9.2 out of 10, Wonderful, (60)
"Overall very good. Bed had a faint urine smell. Very nice location and very quiet."
United States
Lewis S.
$352 nightly
The price is $385
Dec 22 - Dec 23
Total with taxes and fees
Cozy cottage, outdoor space & convenient location
Outdoor dining
Waterfront cottage with tidelands, creek and waterfall!

Cottage in Eastsound

Waterfront cottage with tidelands, creek and waterfall!
10.0 out of 10, Exceptional, (14)
"Lovely home and view! We really enjoyed the amenities and art work in the house and John gave us a great tour of the grounds and shared the history of the property with us. We hope to visit again!"
United States
Angela P.
$729 nightly
The price is $795
Dec 22 - Dec 23
Total with taxes and fees
Waterfront cottage with tidelands, creek and waterfall!
Terrace/patio
@ Marbella Lane - Seas the Bay Sanctuary

Cottage in Oak Harbor

@ Marbella Lane - Seas the Bay Sanctuary
3.0 star property
$509 nightly
The price is $559
Jan 5 - Jan 6, 2026
Total with taxes and fees
@ Marbella Lane - Seas the Bay Sanctuary
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top San Juan Island Hotel Reviews

Anacortes Ship Harbor Inn

Anacortes Ship Harbor Inn

10/10 Excellent
"enjoyed my stay very much, thanks"
todd 1-night trip
Posted 2 days ago
Anacortes Ship Harbor Inn

Find out more about San Juan Island

San Juan Island Cottages information

Number of reviews
196
Accommodation
64 Cottages
Lowest Price
$276
Highest Price
$795

Frequently asked questions

Why book your cottage in San Juan Island with Expedia?
Expedia has some excellent cottages in San Juan Island, so get ready for a memorable vacay close to nature. If you have a set budget, select how much you're willing to spend and the star rating of your property. Or, use our filters to search for cottages with a hot tub or free WiFi. We'll help you find the perfect place whatever your plans or style of travel.
How can I find cheap cottages in San Juan Island?
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