Beginning of main content
Trip Type
Flight 1
Flight 2
Flight 3
Flight 4
Flight 5

Search 321,000 hotels worldwide.

Get the best price available for your trip.

No Expedia cancellation fee to change or cancel almost any hotel reservation.


Featured Stony Brook Independent Hotels

See all 104 Hotels in Stony Brook
Jake's 58 Hotel & Casino

Jake's 58 Hotel & Casino

3635 Express Dr N, Islandia
4.0 out of 5.0
4.1 out of 5 (442 reviews)
Rooms were too warm air conditioning was not good enough - 

$111

$111
Norwalk Inn and Conference Center

Norwalk Inn and Conference Center

99 East Avenue, Norwalk
4.0 out of 5.0
3.9 out of 5 (748 reviews)
Adequate hotel, fine for a overnight stay in Norwa Fine hotel, room and beds were clean. Check in was fine. Would recocmend to anyone that needs hotel … - 

$89

$89
The Westport Inn

The Westport Inn

1595 Post Road East, Westport
3.0 out of 5.0
3.5 out of 5 (32 reviews)
Reliable motel in very convenient location. Could use updating furnishings - 

$84

$84
The Inn At Fox Hollow Hotel

The Inn At Fox Hollow Hotel

7755 Jericho Turnpike, Woodbury
4.5 out of 5.0
4.5 out of 5 (368 reviews)
It was a well decorated and nice hotel. The room is spacious and comfortable - 

$186

$186
Red Carpet Inn Norwalk

Red Carpet Inn Norwalk

469 Westport Avenue, Norwalk
2.5 out of 5.0
2.8 out of 5 (346 reviews)
Great spot Quick check in, spacious room, and breaKfast included! The hotel was very close to many stores, ver … - 

$68

$68
Hotel Hi-Ho

Hotel Hi-Ho

4180 Black Rock Turnpike, Fairfield
3.5 out of 5.0
4.3 out of 5 (209 reviews)
Comfortable week stay Our experience/stay was amazing. Just a couple minutes away from everything, including the train st … - 

$89

$89
Danfords Hotel and Marina

Danfords Hotel and Marina

25 E Broadway, Port Jefferson
4.0 out of 5.0
4.0 out of 5 (403 reviews)
Danford Was excellent. Room clean. Area attractive. Staff pleasant. - 

$137

$137
Whitman Motor Lodge

Whitman Motor Lodge

295 E Jericho Turnpike, Huntington Station
2.5 out of 5.0
4.1 out of 5 (641 reviews)
Wonderful room We usually stay in the king size room but this time we got a one bedroom suite. The room was beauti … - 

$109

$109
Delamar Southport

Delamar Southport

275 Old Post Rd, Southport
4.5 out of 5.0
4.8 out of 5 (111 reviews)
Close to everything but tucked away Very comfortable upscale hotel. Restaurant is excellent. We previously had Thanksgiving dinner here … - 

$209

$209
Oheka Castle Hotel & Estate

Oheka Castle Hotel & Estate

135 W Gate Dr, Huntington
4.0 out of 5.0
4.6 out of 5 (173 reviews)
Beautiful Felt like a King for One night. Beautiful Grounds and Garden. Statley Rooms. Confortable Bed and Gr … - 

$295

$295
Chalet Inn & Suites Centerport

Chalet Inn & Suites Centerport

23 Centershore Road, Centerport
2.5 out of 5.0
3.3 out of 5 (223 reviews)
Beautiful, charming and perfect. We could not have been happier with our stay. Absolutely loved the swans in the pond right next to … - 

$132

$132
The Inn And Spa At East Wind

The Inn And Spa At East Wind

5720 Route 25a, Wading River
4.0 out of 5.0
4.5 out of 5 (260 reviews)
Great off season price. Cozy and Nice. Staff was very professional and friendly. Check in was quick and painless. Restaurant was a bit pri … - 

$89

$89
Lakeland Inn

Lakeland Inn

1630 Lakeland Avenue, Bohemia
2.5 out of 5.0
2.1 out of 5 (60 reviews)
Fair price For the price it was clean enough neighborhood safe the blankets had cigarette burns in them. A/c w … - 

$84

$84
Honeyspot Motor Lodge

Honeyspot Motor Lodge

360 Honeyspot Rd, Stratford
2.0 out of 5.0
1.6 out of 5 (56 reviews)
Happy customer Not enough towels. Besides other that everything went well... - 

$49

$49
The Guesthouse at the Norwalk Inn

The Guesthouse at the Norwalk Inn

99 East Avenue, Norwalk
4.0 out of 5.0
4.4 out of 5 (8 reviews)

$209

$209
Smithtown Inn

Smithtown Inn

880 W Jericho Turnpike, Smithtown
2.5 out of 5.0
2.7 out of 5 (36 reviews)
Enjoyable one night stay. No complaints, other than limited television channels. - 

$110

$110
Three Village Inn

Three Village Inn

150 Main Street, Stony Brook
3.5 out of 5.0
4.3 out of 5 (122 reviews)
Charming, pleasanr place to stay. Comfortable, private cabins. Many face the Icean. I would have asked for one of those if I had know … - 

$165

$165
112 Motel

112 Motel

2001 Route 112, Medford
2.5 out of 5.0
1.0 out of 5 (1 reviews)

$100

$100
The Palms Hotel Fire Island

The Palms Hotel Fire Island

168 Cottage Walk, Ocean Beach
4.0 out of 5.0
3.4 out of 5 (37 reviews)
Beautiful room very happy with the room and the staff with 1 exception, the bikes were in very poor condition and … - 
Clegg's Hotel

Clegg's Hotel

478 Bayberry Walk, Ocean Beach
3.0 out of 5.0
3.3 out of 5 (49 reviews)
nice hotel, close to ferry Nice hotel with no frills. It was fine accommodations for the type of getaway we were looking for. … - 
Map

Recently booked Stony Brook hotels

Three Village Inn
3.5 out of 5.0
Last booking: 3 hours ago
Hilton Garden Inn Stony Brook
3.5 out of 5.0
Last booking: 10 hours ago

Independent Stony Brook Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in Stony Brook, New York. Known for well-appointed rooms and friendly, personalized service, each of the top Independent Stony Brook hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some Stony Brook Independent locations may even offer extra little benefits and discounts for frequent travelers.