Top 10 Hotels in San Juan Bautista (from $17) 2026 - Competitive Prices

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Our top choices for San Juan Bautista hotels

A wooden deck with railings leading to a pool area, surrounded by lush greenery.

A swimming pool with a person in the water, surrounded by lush greenery and a palm tree.

A wooden building with a door labeled "Joe," a mural of a hummingbird and flowers, and a wooden bench outside.

A bed with a blue and white bedspread, two pillows, and a decorative pillow with a red leaf design. There are towels folded on the bed and a small table with a cup and a tissue box.

1. Pura Chata Ecolodge

San Juan Bautista

$76 nightly

$76 total

Oct 9 - Oct 10

A building surrounded by dense tropical foliage, with a white exterior and large windows.

A bedroom with a bed, a wooden headboard, a staircase, and a mirror.

A pathway through a lush garden with dense foliage and a wooden structure in the distance.

2. Amazon Lodge Varillal

San Juan Bautista

$38 nightly

$38 total

Oct 1 - Oct 2

A wooden rocking chair and a table with a mug under a thatched roof structure, overlooking a pond and lush greenery.

A room with a bed, a table, chairs, and a shelf with items.

A forested path with a dirt trail, surrounded by dense green foliage and trees.

A kitchen with wooden cabinets, a sink, and various kitchen utensils.

3. Amaca Eco Station

San Juan Bautista

$37 nightly

$37 total

Oct 31 - Nov 1

A modern hallway with a red sofa, a wooden door, and a green pillar.

A modern hallway with a red sofa, a green pillar, and a wooden door.

A multi-story building with a green base and red accents, featuring balconies and air conditioning units.

A woman sitting on a brown leather sofa, reading a book, with a glass coffee table in front of her. There are potted plants around the room.

4. Hospedaje Las Amazonas

San Juan Bautista

Mircea

$17 nightly

$17 total

Oct 1 - Oct 2

Three bottles of Double Black whiskey on a table with a promotional display.

A hotel with a modern facade, a signboard displaying the word "HOTEL," and a variety of national flags hanging outside.

An outdoor dining area with tables and chairs, a pool, and a covered seating area.

A spacious, modern hotel lobby with a reception desk, seating area, and large windows.

5. Hotel Embassy Suites

Nauta

$32 nightly

$32 total

Oct 9 - Oct 10

A group of people seated at a table with food and drinks, in a room with a wooden wall and a window.

A person sitting on a wooden dock by a body of water with trees in the background.

A building with two blue doors, one with a sign indicating a men's and women's restroom.

A room with two beds, wooden flooring, and a window with a view.

6. ayatur lodge iquitos

Fernando Lores

$59 nightly

$59 total

Oct 4 - Oct 5

A hotel with a swimming pool, outdoor seating, and a staircase leading to the upper level.

A spacious living room with a large painting of a cityscape, a bookshelf filled with books, and a modern ceiling fan.

A hotel room with a bed, a window with curtains, a painting on the wall, and a door leading to an outdoor area.

7. CASA BLANCA HOTEL

Morona Cocha

Miguel

$42 nightly

$42 total

Oct 22 - Oct 23

A riverside lodge with wooden structures, a boat docked by the water, and lush greenery surrounding the area.

A buffet setup with various food items and drinks, including watermelon slices and a green leafy wall.

A room with two beds, a table, a fan, and a mosquito net.

A foosball table in a room with wooden flooring and a hammock hanging from the ceiling.

8. Jacamar Lodge Expeditions

Indiana

David

$350 nightly

$350 total

Oct 2 - Oct 3

A thatched-roof structure with a wooden deck extending over water, surrounded by trees.

A restaurant with wooden tables and chairs, large windows, and hanging lights.

A thatched roof structure with a bamboo wall and a door marked with the number 4.

A bar area with wooden stools, a variety of bottles, and a decorative bowl on the counter.

9. Cumaceba Amazon Lodge

Belén

"I traveled with my family to the Cumaceba lodge. We stayed for three nights and four days. We had an amazing Amazon experience! Our guide Dixon was fabulous! He made our stay even better by his experience and knowledge of the area, animals, and flora. The 2 to 3 excursions per day kept us busy and always wanting to find more wonders of the rainforest. I would truly recommend this lodge if you are wanting a hands-on experience of the Amazon."

Michael Dirk

$263 nightly

$263 total

Oct 13 - Oct 14

An aerial view of a resort with thatched-roof huts, a swimming pool, and lush greenery.

A row of thatched-roof huts with wooden decks, surrounded by lush greenery and a clear path.

A spacious, open-roofed dining area with wooden furniture and a sign welcoming visitors to Curaka Expeditions Amazon River.

A room with a bed, a desk, and two wicker chairs.

10. Cumaceba Curaka Inn

Belén

Alejandra

$254 nightly

$254 total

Oct 1 - Oct 2

A spacious room with a high wooden ceiling, a hammock, and a bar area with stools.

A rustic interior with wooden furniture, a high ceiling, and hanging plants.

A traditional wooden structure with thatched roofs and a central plant.

11. Avatar Amazon Lodge & Canopy Park

Indiana

Emmanuel

$180 nightly

$180 total

Oct 1 - Oct 2

A clear blue pool with a tiled edge, surrounded by palm trees and a building with a pink roof.

A long table covered with a patterned tablecloth, with food items and people serving themselves.

A wooden structure with a thatched roof, leading to a room with a bed and a bench.

A covered walkway with a wooden floor, surrounded by greenery and buildings with corrugated metal roofs.

12. Ecoadventure Amazon

Indiana

$113 nightly

$113 total

Oct 1 - Oct 2

A covered dining area with tables and chairs, large windows, and potted plants.

A room with four beds, a wooden table, and a chair.

A natural landscape with water lily pads and a white bird in the foreground.

A group of people gathered around a campfire in an outdoor setting with a building in the background.

13. Amazon Nativo Lodge

Indiana

"My trip to the Amazon was one of the highlights of a three-week vacation to Latin America, and I owe it in large part to Amazon Nativo Lodge. Please note that you should contact them independently soon after. They will arrange your transportation from the airport to the lodge. They also have plenty of tour and activity options, which I highly recommend. Although I'm not one for guided tours, I'm thankful they have guides so familiar with the jungle because it would have been hard to find my way...

Robert

$140 nightly

$140 total

Oct 31 - Nov 1

A wooden walkway with a thatched roof, surrounded by lush greenery.

A buffet setup with various food items and a beverage dispenser.

A room with two beds, a window with a view of greenery, and a patterned carpet.

A person holding a large snake in a forested area.

14. Cabaña Amazon Lodge

Indiana

$266 nightly

$266 total

Oct 1 - Oct 2

A thatched-roof hut with a wooden frame, a hammock, and a window with curtains.

A wooden dining table set with plates, glasses, and a bottle, surrounded by chairs in a covered outdoor area with a view of greenery.

15. Amazon Jungle Expeditions Lodge

Iquitos

$208 nightly

$208 total

Oct 3 - Oct 4

A rustic room with wooden furniture, including a sofa, chairs, and a table.

A bar area with wooden shelves stocked with bottles and glasses, a counter with a glass display, and bar stools.

A spacious room with wooden flooring, white cushioned seating, a bar area, and large windows.

A wooden structure with a thatched roof, elevated on stilts, and a simple wooden deck.

16. Amazon Journeys Lodge & Expedition

Indiana

$162 nightly

$162 total

Oct 1 - Oct 2

A rustic thatched-roof hut with a wooden exterior, surrounded by lush greenery and banana plants.

A room with a large window, wooden walls, and a bamboo ceiling.

A traditional wooden room with a bed, a bench, and a thatched roof.

A tent with a blue tarp on the left and a green tarp on the right, set up indoors with a window showing greenery outside.

17. Inti Amazon Lodge - Lupuna Zona 2

Belén

$40 nightly

$40 total

Oct 1 - Oct 2

A room with bunk beds and a single bed, wooden furniture, and large windows with a forest view.

A person serving food at an outdoor dining area with a table set for two, a plate of fried rice, a glass of water, a glass of juice, and a bowl of plantain chips.

A room with a table covered by a lace tablecloth, a shelf with books and a bottle, and a green wall with a window.

A group of people standing on a wooden platform in front of a building with a corrugated metal roof, partially submerged in water.

18. ESTACIÓN BIOLÓGICA SMF II ZONA

Indiana

$45 nightly

$45 total

Oct 29 - Oct 30

A modern building with a white facade, multiple windows, and a garage door. There are several palm trees and potted plants in the front yard.

A modern living room with a sofa, chairs, a coffee table, and a patterned rug.

A spacious hotel lobby with a central reception desk, a polished floor, and a modern ceiling design.

A bedroom with a bed, a chair, a small table, an air conditioner, and a window with curtains.

19. Hotel Fenix

Iquitos

WILLIAM

$30 nightly

$30 total

Oct 5 - Oct 6

A traditional thatched-roof structure with a green exterior wall and a wooden deck.

A dining table set with plates, cutlery, and wine glasses, with a bottle of wine in the center.

20. Amazon Jungle Expeditions Lodge

Fernando Lores

$136 nightly

$136 total

Oct 4 - Oct 5

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Where to stay in San Juan Bautista

Find the best San Juan Bautista areas and neighborhoods for the activities you enjoy most.

AA.HH. El Castañal

AA.HH. El Castañal

Though AA.HH. El Castañal might not have many top sights, you can venture to the surrounding area to see attractions like Plaza José Abelardo Quiñones and Amazon Golf Course.

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Stay near popular San Juan Bautista attractions

Plaza José Abelardo Quiñones

8.4/10 (9 reviews)

Explore the great outdoors at Plaza José Abelardo Quiñones, a lovely green space in San Juan Bautista.

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Amazon Rescue Center

8.8/10 (6 reviews)

Enjoy an outing to Amazon Rescue Center during your stay in Varillal.

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Quistococha Lake

8.0/10 (16 reviews)

Explore the great outdoors at Quistococha Lake, a lovely green space in San Juan Bautista. While you're in the area, stroll along the riverfront.

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Mall Aventura

You can enjoy retail therapy at Mall Aventura during your trip to San Juan Bautista.

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El Encanto de Laguna Waterpark

8.0/10 (3 reviews)

Explore the great outdoors at El Encanto de Laguna Waterpark, a lovely green space in San Juan Bautista.

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Aquarium of the Amazon

Take the kids to visit the sea creatures at Aquarium of the Amazon during your trip to San Juan Bautista.

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Amazon Golf Course

8.0/10 (3 reviews)

Enjoy a round of golf in San Juan Bautista at Amazon Golf Course. While you're in the area, stroll along the riverfront.

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Laguna Quistacocha

Find out about the history of San Juan Bautista with a stop at Laguna Quistacocha. While you're in the area, stroll along the riverfront.

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Top San Juan Bautista Hotel Reviews

Victoria Regia Hotel

10/10 Excellent

"The breakfast was amazing, with a variety of local and European food, from toasts and scrambled eggs to rice, delicious fresh fruit juice and fresh local fruits and pastries. We couldn't even try it all. Our room was super clean, the bed comfortable, great shower, the staff really friendly. Highly recommend."

Hotel La Casona

10/10 Excellent

"Adorable!!! Great location and such a boutique feel. The rooms were good size, the had water in the lobby for us. The staff was super friendly and quick check in, they took us to our rooms, insisted on taking our bags for us (two rooms). We declined cleaning our rooms the next day and just requested towels, they were delivered quickly. The location was great, I am so glad we picked this place!"

Hotel Marañón

10/10 Excellent

"Clean, modern with a beautiful pool."

Studio 69

8/10 Good

"Nice hotel. Everything worked. Note: they charge a 10% Expedia booking fee along with a ridiculous exchange rate. We settled on using the actual exchange rate and 4%."

El Dorado Classic Hotel

10/10 Excellent

"We had a great stay at the El Dorado Classic Hotel in Iquitos. The hotel was clean, modern, and comfortable overall, and it was a very nice place to stay before and after our time in the Amazon. Our room was clean and comfortable, the beds were very nice, and the air conditioning worked well, which was especially appreciated in the Iquitos heat. The hotel itself felt well maintained and modern, and the pool was a great place to relax. We also enjoyed the free breakfast, which was good and convenient before heading out for the day. Overall, the hotel had everything we needed for a comfortable and easy stay in Iquitos. We also want to give special recognition to Diego, the bartender and waiter. He was always attentive, friendly, and welcoming, and he always had a big smile. Diego helped make our stay even more enjoyable with his great attitude and excellent service. Overall, we had a very positive experience at El Dorado Classic Hotel and would recommend it to travelers staying in Iquitos who want a clean, comfortable, and convenient hotel with friendly service."

Poseidon Guest House

10/10 Excellent

"We had a much delayed flight, arriving to Iquitos after midnight, but Wilson was waiting there to pick us up! That was very much appreciated after the flight stress/troubles. He gave us a free (very short) ride to the hotel, where he said we didn’t have to do the checkin/payment until next day since we wanted to get sleep. The room was clean and spacious and the shower water was hot. We had a deep sleep. Next morning, breakfast was ready at the requested time and was tasty eggs and bread with fresh juice. Dining area was clean and homey. Checkin/Checkout with Wilson was seamless and quick! Thought we didn’t have much time to experience the hotel, it was a wonderful stay."

More cheap stays in San Juan Bautista

Hotel Fenix

Pasaje Angel Brusco 172-174 Iquitos Loreto

$30 nightly

$30 total

Oct 5 - Oct 6

Hotel La Casona

Avenida Fitzcarrald 147 Iquitos Loreto

$33 nightly

$33 total

Oct 1 - Oct 2

8.6/10 Excellent! (143 reviews)

Amazon Lodge Varillal

Carretera Iquitos Nauta 137 km San Juan Bautista Iquitos

$38 nightly

$38 total

Oct 1 - Oct 2

Studio 69

Jr. Pevas 669 Iquitos Loreto

$40 nightly

$40 total

Oct 31 - Nov 1

9.2/10 Wonderful! (87 reviews)

La Posada Del Cauchero Hotel & Suites

449 Antonio Raimondi Iquitos Loreto

$47 nightly

$47 total

Oct 1 - Oct 2

8.8/10 Excellent! (13 reviews)

Alojamiento Casa Luna

727 Jirón Rufino Echenique Iquitos Loreto

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Frequently asked questions

What's the best place to stay in San Juan Bautista?

Based on our traveler data, Amazon Lodge Varillal is one of the top choices for your stay. This hotel offers 2 restaurants and free breakfast. Other good choices for your stay include Hospedaje Las Amazonas and Hotel Sombrero de Paja. See all available top hotels, or vacation rentals in San Juan Bautista.

What's the top vacation rental in San Juan Bautista?

Iquitos Lodge House by the River. Enjoy the views & sound of the Amazon: This highly rated vacation home rental in San Juan Bautista offers an outdoor pool, a garden, and a barbecue grill to help you feel perfectly comfortable in your new surroundings. It has 5 bedrooms as well as a kitchen with a fridge, a stovetop, and a microwave, so you can cook with friends or family. See all vacation rentals in San Juan Bautista.

If I need to cancel my hotel reservation in San Juan Bautista, will I receive a refund?

Yes! You'll find that most hotel reservations are refundable provided that you cancel before the hotel's cancellation deadline, which is often 24 or 48 hours before your scheduled arrival. If your reservation is non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in San Juan Bautista.

Where can I learn more about changing or cancelling my trip to San Juan Bautista?

For more details about picking new dates or cancelling your trip to San Juan Bautista, go to https://www.expedia.com/service/.

What's the best place to stay on a budget in San Juan Bautista?

Based on our traveler reviews, Hospedaje Las Amazonas is a top choice for a less expensive stay. View all budget hotels in San Juan Bautista.

What's the best pet-friendly accommodation in San Juan Bautista?

Amazon Lodge Varillal is a top hotel for people traveling with their pets, and offers 2 restaurants and TVs for its human guests. Two other good options for you and your pet's trip include Pura Chata Ecolodge and Casa kukama lodge. See more pet-friendly hotel accommodations in San Juan Bautista.

What are some accommodations with pools in San Juan Bautista?

Hotel Parthenon is a top hotel with a pool, free breakfast, and free WiFi. Poseidon Guest House is an additional hotel with an onsite pool. View all hotels with pools in San Juan Bautista.

What is the best spa hotel in San Juan Bautista?

Iquitos See all spa hotels in San Juan Bautista.

What is staying in San Juan Bautista like?

Travelers to San Juan Bautista will find plenty to explore and enjoy. In San Juan Bautista, there are 17 hotels and other accommodations to choose from. Find out more about San Juan Bautista.

What should I see while I'm in San Juan Bautista?

The picturesque setting of Plaza José Abelardo Quiñones and Quistococha Lake exemplify the area's natural beauty. A couple of additional sights to add to your agenda are Amazon Rescue Center and El Encanto de Laguna Waterpark. Check out what more to see and do in Expedia's San Juan Bautista guide.

What's the seasonal weather like in San Juan Bautista?

The hottest months are usually September and October with an average temp of 79°F, while the coldest months are July and June with an average of 77°F. The rainiest months in San Juan Bautista are March, April, January, and December, with each month seeing an average of 14 inches of rainfall.

Find hotels in San Juan Bautista from $17

Upfront pricing

Treat yourself

Be picky

Go beyond your typical stay in San Juan Bautista

Check prices for these dates

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Star rating

Guest rating

Our top choices for San Juan Bautista hotels

1. Pura Chata Ecolodge

2. Amazon Lodge Varillal

3. Amaca Eco Station

4. Hospedaje Las Amazonas

5. Hotel Embassy Suites

6. ayatur lodge iquitos

7. CASA BLANCA HOTEL

8. Jacamar Lodge Expeditions

9. Cumaceba Amazon Lodge

10. Cumaceba Curaka Inn

11. Avatar Amazon Lodge & Canopy Park

12. Ecoadventure Amazon

13. Amazon Nativo Lodge

14. Cabaña Amazon Lodge

15. Amazon Jungle Expeditions Lodge

16. Amazon Journeys Lodge & Expedition

17. Inti Amazon Lodge - Lupuna Zona 2

18. ESTACIÓN BIOLÓGICA SMF II ZONA

19. Hotel Fenix

20. Amazon Jungle Expeditions Lodge

Where to stay in San Juan Bautista

AA.HH. El Castañal

Stay near popular San Juan Bautista attractions

Plaza José Abelardo Quiñones

Amazon Rescue Center

Quistococha Lake

Mall Aventura

El Encanto de Laguna Waterpark

Aquarium of the Amazon

Amazon Golf Course

Laguna Quistacocha

Top San Juan Bautista Hotel Reviews

Victoria Regia Hotel

Hotel La Casona

Hotel Marañón

Studio 69

El Dorado Classic Hotel

Poseidon Guest House

More cheap stays in San Juan Bautista

Hotel Fenix

Hotel La Casona

Amazon Lodge Varillal

Studio 69

La Posada Del Cauchero Hotel & Suites

Alojamiento Casa Luna

Frequently asked questions

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