Top 10 Hotels in San Juan Bautista (from $17) 2026 - Competitive Prices

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Our top choices for San Juan Bautista hotels

A wooden deck with railings leading to a pool area, surrounded by lush greenery.

A bed with a blue and white bedspread, two pillows, and a decorative pillow with a red leaf design. There are towels folded on the bed and a small table with a cup and a tissue box.

A wooden corridor with a sign indicating a bar, a woven wall hanging, and a concrete pathway leading to outdoor seating.

A swimming pool with a person in the water, surrounded by lush greenery and a palm tree.

1. Pura Chata Ecolodge

San Juan Bautista

$85 nightly

$85 total

Nov 6 - Nov 7

A building surrounded by dense tropical foliage, with a white exterior and large windows.

A spacious restaurant with high ceilings, large windows, and a rustic metal roof. Tables are arranged for dining, and there are ceiling fans and a TV mounted on the wall.

A pathway through a lush garden with dense foliage and a wooden structure in the distance.

2. Amazon Lodge Varillal

San Juan Bautista

$38 nightly

$38 total

Oct 8 - Oct 9

A wooden rocking chair and a table with a mug under a thatched roof structure, overlooking a pond and lush greenery.

A thatched-roof structure surrounded by dense tropical foliage.

A room with a bed, a table, chairs, and a shelf with items.

A forested path with a dirt trail, surrounded by dense green foliage and trees.

3. Amaca Eco Station

San Juan Bautista

$37 nightly

$37 total

Nov 6 - Nov 7

A modern hallway with a red sofa, a wooden door, and a green pillar.

A multi-story building with a green base and red accents, featuring balconies and air conditioning units.

A room with a television displaying 'Hospedaje Las Amazonas' and a table with a white teapot and cup.

A woman sitting on a brown leather sofa, reading a book, with a glass coffee table in front of her. There are potted plants around the room.

4. Hospedaje Las Amazonas

San Juan Bautista

Mircea

$17 nightly

$17 total

Oct 8 - Oct 9

A group of people seated at a table with food and drinks, in a room with a wooden wall and a window.

A building with two blue doors, one with a sign indicating a men's and women's restroom.

A room with two beds, wooden flooring, and a window with a view.

A rustic building with a thatched roof and a sign reading 'R TOUR.'

5. ayatur lodge iquitos

Fernando Lores

$70 nightly

$70 total

Nov 6 - Nov 7

A long dining table with chairs, set for breakfast with plates of food, cups, and cutlery.

A reception desk with a woman seated behind it, surrounded by various decorative items and documents on the wall.

An outdoor seating area with tables and chairs, umbrellas, and potted plants.

A hotel room with three wooden beds, each with white linens and a small green plant. There is a wooden nightstand between the beds, and a window with a dark wooden blind.

6. La Casa del Paucar

Iquitos City Center

Hunter

$22 nightly

$22 total

Oct 16 - Oct 17

A hotel with a swimming pool, outdoor seating, and a staircase leading to the upper level.

A spacious living room with a large painting of a cityscape, a bookshelf filled with books, and a modern ceiling fan.

A hotel room with a bed, a window with curtains, a painting on the wall, and a door leading to an outdoor area.

The entrance of Casa Blanca Hotel & Restaurante with a covered entrance and multiple flags.

7. CASA BLANCA HOTEL

Morona Cocha

Miguel

$42 nightly

$42 total

Oct 22 - Oct 23

A dining table set with plates, cutlery, and wine glasses, with a bottle of wine in the center.

A toucan perched on a branch with green leaves and fruit.

A bathroom with wooden walls, a green sink, a toilet, and a shower area.

A thatched-roof hut with a wooden frame, a hammock, and a window with curtains.

8. Amazon Jungle Expeditions Lodge

Iquitos

$234 nightly

$234 total

Oct 8 - Oct 9

A traditional wooden house with a thatched roof, surrounded by lush greenery.

A person in a boat on a calm river, surrounded by lush greenery and a cloudy sky.

A restaurant setting with a chef preparing food at the counter, a table with various dishes and drinks, and a view of greenery outside.

A room with two beds, a wooden floor, a ceiling fan, and a view of greenery outside.

9. Muyuna Lodge

Fernando Lores

Lorna

$648 nightly

$648 total

Oct 8 - Oct 9

A spacious corridor with a polished floor, a large parrot sculpture, and a ceiling with a geometric pattern.

A room with a patterned floor, a ceiling fan, framed artwork, and a glass display case with items.

A bedroom with a wooden headboard, two beds with white bedding, a painting of a leopard on the wall, and a wooden ceiling.

A covered courtyard with a central planter, yellow pillars, and tiled flooring.

10. Casa del Jaguar

Iquitos

Riccardo

$20 nightly

$20 total

Oct 8 - Oct 9

A modern building with a balcony, a hanging chair, and a small seating area with cushions.

A balcony with a view of a river and greenery, a bottle of wine, and a glass on a small table.

A modern bedroom with a large bed, a green bathtub, and a view of the outdoors.

A spacious lobby with a reception desk, seating area, and large windows offering views of the outdoors.

11. Hotel de Turistas Iquitos

Iquitos City Center

Julia

$53 nightly

$53 total

Oct 24 - Oct 25

A wooden deck with a metal railing, a red corrugated roof, and a view of greenery.

A room with two beds, a wooden ceiling, and a green floor.

A room with a bed, two chairs, a small table, and a window with curtains.

A hotel room with three single beds, green patterned curtains, and a red table.

12. Aventour Amazon Lodge

Iquitos City Center

$66 nightly

$66 total

Oct 16 - Oct 17

A modern building with a white facade, multiple windows, and a garage door. There are several palm trees and potted plants in the front yard.

A modern bathroom with a large mirror, a wooden door, and a staircase with a metal railing.

A bedroom with a bed, a chair, a small table, an air conditioner, and a window with curtains.

A spacious hotel lobby with a central reception desk, a polished floor, and a modern ceiling design.

13. Hotel Fenix

Iquitos

WILLIAM

$36 nightly

$36 total

Oct 8 - Oct 9

An aerial view of a resort with thatched-roof huts, a swimming pool, and lush greenery.

A room with a bed, a desk, and two wicker chairs.

A swimming pool with lounge chairs and thatched-roof huts in the background.

A spacious, open-roofed dining area with wooden furniture and a sign welcoming visitors to Curaka Expeditions Amazon River.

14. Cumaceba Curaka Inn

Belén

Alejandra

$254 nightly

$254 total

Oct 8 - Oct 9

A table with plates of food, a cup of coffee, and a view of a body of water.

A hotel room with two beds, a large window with a view of greenery, a ceiling fan, and a mirror on the wall.

A swimming pool with steps leading into it, surrounded by lush greenery and a thatched-roof structure.

15. Milia Amazon Lodge

Iquitos City Center

$146 nightly

$146 total

Oct 8 - Oct 9

Three bottles of Double Black whiskey on a table with a promotional display.

A spacious, modern hotel lobby with a reception desk, seating area, and large windows.

A hotel with a modern facade, a signboard displaying the word "HOTEL," and a variety of national flags hanging outside.

An outdoor dining area with tables and chairs, a pool, and a covered seating area.

16. Hotel Embassy Suites

Nauta

Zuleika Valentina

$32 nightly

$32 total

Oct 16 - Oct 17

A traditional thatched-roof structure with wooden walls and a garden area with a stone pathway.

A group of people dining at a table with a patterned tablecloth, surrounded by chairs and a window with a view of trees.

A room with two beds, a chair, and a large plant.

A thatched-roof structure with a wooden deck and glass walls, surrounded by greenery.

17. Amazon Tropical Expeditions

Iquitos

$130 nightly

$130 total

Oct 8 - Oct 9

A compact kitchen with wooden cabinets, a stainless steel refrigerator, a microwave, and a sink.

A kitchen with wooden cabinets, a stainless steel refrigerator, a sink, and a microwave.

A living room with a wooden ceiling, a television mounted on the wall, a kitchen area with wooden cabinets, and a dining table with chairs.

A bedroom with a bed, a nightstand, a wardrobe, and a window with curtains.

18. BELLO ORIENTE

Iquitos

$41 nightly

$41 total

Oct 8 - Oct 9

A dining area with wooden chairs and tables, a person standing near a wall with framed pictures, and a large window with a view.

A person seated by a window with potted plants, overlooking a building with a red roof.

A spacious indoor area with multiple wooden tables and chairs, large windows offering views of the outside, and potted plants adding greenery.

A hotel room with a wooden bed, a nightstand, a wooden wardrobe, and a painting on the wall.

19. Hotel Yagua Iquitos

Iquitos City Center

"I would very rarely write anything but positive reviews, but I can’t in good conscience do that here. Staff seemed in general to be disinterested in helping, and also didn’t seem to be able to navigate the computer booking system to find our booking. They also attempted to double charge us (twice) despite being shown receipts from hotels.com! In addition to this, when we requested a room away from the busy and loud main road outside (which prevented a good night’s sleep on our first night), we...

Iarlaith

$37 nightly

$37 total

Oct 10 - Oct 11

A nighttime pool area with a modern design, including a unique water feature and seating area.

A modern interior with a central seating area, high ceilings, and contemporary furnishings.

A modern bar area with wooden furniture, a central bar counter, and a variety of liquor bottles.

A modern interior with a high ceiling, wooden paneling, and contemporary furniture.

20. DoubleTree by Hilton Iquitos

Iquitos City Center

James

$140 nightly

$140 total

Oct 13 - Oct 14

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Where to stay in San Juan Bautista

Find the best San Juan Bautista areas and neighborhoods for the activities you enjoy most.

AA.HH. El Castañal

AA.HH. El Castañal

Though AA.HH. El Castañal might not have many top sights, you can venture to the surrounding area to see attractions like Plaza José Abelardo Quiñones and Amazon Golf Course.

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Stay near popular San Juan Bautista attractions

Plaza José Abelardo Quiñones

8.4/10 (9 reviews)

Explore the great outdoors at Plaza José Abelardo Quiñones, a lovely green space in San Juan Bautista.

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Amazon Rescue Center

8.8/10 (6 reviews)

Enjoy an outing to Amazon Rescue Center during your stay in Varillal.

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Quistococha Lake

8.0/10 (16 reviews)

Explore the great outdoors at Quistococha Lake, a lovely green space in San Juan Bautista. While you're in the area, stroll along the riverfront.

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Mall Aventura

You can enjoy retail therapy at Mall Aventura during your trip to San Juan Bautista.

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El Encanto de Laguna Waterpark

8.0/10 (3 reviews)

Explore the great outdoors at El Encanto de Laguna Waterpark, a lovely green space in San Juan Bautista.

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Aquarium of the Amazon

Take the kids to visit the sea creatures at Aquarium of the Amazon during your trip to San Juan Bautista.

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Amazon Golf Course

8.0/10 (3 reviews)

Enjoy a round of golf in San Juan Bautista at Amazon Golf Course. While you're in the area, stroll along the riverfront.

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Laguna Quistacocha

Find out about the history of San Juan Bautista with a stop at Laguna Quistacocha. While you're in the area, stroll along the riverfront.

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Top San Juan Bautista Hotel Reviews

El Dorado Classic Hotel

10/10 Excellent

"friendly staff clean room and the hotel close to the center very accessible"

Victoria Regia Hotel

8/10 Good

"We need more towels shampoo conditioner and the other things was good the food very nice"

Hotel La Casona

10/10 Excellent

"Adorable!!! Great location and such a boutique feel. The rooms were good size, the had water in the lobby for us. The staff was super friendly and quick check in, they took us to our rooms, insisted on taking our bags for us (two rooms). We declined cleaning our rooms the next day and just requested towels, they were delivered quickly. The location was great, I am so glad we picked this place!"

La Posada Del Cauchero Hotel & Suites

8/10 Good

"Very clean room with amazing river view with my booking. Extremely friendly and helpful spanish speaking staff - use (google) translate app if you don't speak spanish. Average pool and was under maintenance. Many shops on the same street if you are looking for chips, pop/soda, and juice. Most of the nicer restaurants are closer to downtown square which is 7-10 minutes walk only. Area of improvement: Breakfast! only very few options. Nothing much for vegetarians other than fruits - pineapple, papaya, and water melon. They can make some scrambled egg or fried eggs if you ask, but the portion is quite small for me. I guess I can keep asking.. which does make me feel like I am eating too much?"

CASA BLANCA HOTEL

10/10 Excellent

"So it’s not right next to central Iquitos, but that doesn’t matter. Central is a quick moto taxi ride for very cheap, or a 15-20 minute walk. What matters to me is how nice this place was. Iquitos is a rowdy town. It’s lively with a lot of hustle and bustle. This property is not: it is serene. I loved it so much, I ended up staying an extra night. It’s calm, relaxing, and downright beautiful. Right when you walk in, you are met with a beautiful courtyard that centers a gorgeous pool. There’s a small bar and restaurant, excursion services, and a 24 hour service concierge. My bed was comfy and the hotel is quiet and filled with beautiful flowers and trees and plants (yes inside the hotel). Will stay again 100%. Ps. The staff were all incredible. Such cool people!"

Poseidon Guest House

10/10 Excellent

"We had a much delayed flight, arriving to Iquitos after midnight, but Wilson was waiting there to pick us up! That was very much appreciated after the flight stress/troubles. He gave us a free (very short) ride to the hotel, where he said we didn’t have to do the checkin/payment until next day since we wanted to get sleep. The room was clean and spacious and the shower water was hot. We had a deep sleep. Next morning, breakfast was ready at the requested time and was tasty eggs and bread with fresh juice. Dining area was clean and homey. Checkin/Checkout with Wilson was seamless and quick! Thought we didn’t have much time to experience the hotel, it was a wonderful stay."

More cheap stays in San Juan Bautista

Hotel Fenix

Pasaje Angel Brusco 172-174 Iquitos Loreto

$36 nightly

$36 total

Oct 8 - Oct 9

Hotel La Casona

Avenida Fitzcarrald 147 Iquitos Loreto

$38 nightly

$38 total

Oct 8 - Oct 9

8.6/10 Excellent! (143 reviews)

Amazon Lodge Varillal

Carretera Iquitos Nauta 137 km San Juan Bautista Iquitos

$38 nightly

$38 total

Oct 8 - Oct 9

Studio 69

Jr. Pevas 669 Iquitos Loreto

$43 nightly

$43 total

Oct 8 - Oct 9

9.2/10 Wonderful! (87 reviews)

La Posada Del Cauchero Hotel & Suites

449 Antonio Raimondi Iquitos Loreto

$52 nightly

$52 total

Oct 17 - Oct 18

8.8/10 Excellent! (13 reviews)

Alojamiento Casa Luna

727 Jirón Rufino Echenique Iquitos Loreto

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Frequently asked questions

What's the best place to stay in San Juan Bautista?

Based on our traveler data, Amazon Lodge Varillal is one of the top choices for your stay. This hotel offers 2 restaurants and free breakfast. Other good choices for your stay include Hospedaje Las Amazonas and Hotel Sombrero de Paja. See all available top hotels, or vacation rentals in San Juan Bautista.

What's the top vacation rental in San Juan Bautista?

Iquitos Lodge House by the River. Enjoy the views & sound of the Amazon: This highly rated vacation home rental in San Juan Bautista offers an outdoor pool, a garden, and a barbecue grill to help you feel perfectly comfortable in your new surroundings. It has 5 bedrooms as well as a kitchen with a fridge, a stovetop, and a microwave, so you can cook with friends or family. See all vacation rentals in San Juan Bautista.

If I need to cancel my hotel reservation in San Juan Bautista, will I receive a refund?

Yes! You'll find that most hotel reservations are refundable provided that you cancel before the hotel's cancellation deadline, which is often 24 or 48 hours before your scheduled arrival. If your reservation is non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in San Juan Bautista.

Where can I learn more about changing or cancelling my trip to San Juan Bautista?

For more details about picking new dates or cancelling your trip to San Juan Bautista, go to https://www.expedia.com/service/.

What's the best place to stay on a budget in San Juan Bautista?

Based on our traveler reviews, Hospedaje Las Amazonas is a top choice for a less expensive stay. View all budget hotels in San Juan Bautista.

What's the best pet-friendly accommodation in San Juan Bautista?

Amazon Lodge Varillal is a top hotel for people traveling with their pets, and offers 2 restaurants and TVs for its human guests. Two other good options for you and your pet's trip include Pura Chata Ecolodge and Casa kukama lodge. See more pet-friendly hotel accommodations in San Juan Bautista.

What are some accommodations with pools in San Juan Bautista?

Hotel Parthenon is a top hotel with a pool, free breakfast, and free WiFi. Poseidon Guest House is an additional hotel with an onsite pool. View all hotels with pools in San Juan Bautista.

What is the best spa hotel in San Juan Bautista?

Iquitos See all spa hotels in San Juan Bautista.

What is staying in San Juan Bautista like?

Travelers to San Juan Bautista will find plenty to explore and enjoy. In San Juan Bautista, there are 17 hotels and other accommodations to choose from. Find out more about San Juan Bautista.

What should I see while I'm in San Juan Bautista?

The picturesque setting of Plaza José Abelardo Quiñones and Quistococha Lake exemplify the area's natural beauty. A couple of additional sights to add to your agenda are Amazon Rescue Center and El Encanto de Laguna Waterpark. Check out what more to see and do in Expedia's San Juan Bautista guide.

What's the seasonal weather like in San Juan Bautista?

The hottest months are usually September and October with an average temp of 79°F, while the coldest months are July and June with an average of 77°F. The rainiest months in San Juan Bautista are March, April, January, and December, with each month seeing an average of 14 inches of rainfall.

Find hotels in San Juan Bautista from $17

Upfront pricing

Treat yourself

Be picky

Go beyond your typical stay in San Juan Bautista

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for San Juan Bautista hotels

1. Pura Chata Ecolodge

2. Amazon Lodge Varillal

3. Amaca Eco Station

4. Hospedaje Las Amazonas

5. ayatur lodge iquitos

6. La Casa del Paucar

7. CASA BLANCA HOTEL

8. Amazon Jungle Expeditions Lodge

9. Muyuna Lodge

10. Casa del Jaguar

11. Hotel de Turistas Iquitos

12. Aventour Amazon Lodge

13. Hotel Fenix

14. Cumaceba Curaka Inn

15. Milia Amazon Lodge

16. Hotel Embassy Suites

17. Amazon Tropical Expeditions

18. BELLO ORIENTE

19. Hotel Yagua Iquitos

20. DoubleTree by Hilton Iquitos

Where to stay in San Juan Bautista

AA.HH. El Castañal

Stay near popular San Juan Bautista attractions

Plaza José Abelardo Quiñones

Amazon Rescue Center

Quistococha Lake

Mall Aventura

El Encanto de Laguna Waterpark

Aquarium of the Amazon

Amazon Golf Course

Laguna Quistacocha

Top San Juan Bautista Hotel Reviews

El Dorado Classic Hotel

Victoria Regia Hotel

Hotel La Casona

La Posada Del Cauchero Hotel & Suites

CASA BLANCA HOTEL

Poseidon Guest House

More cheap stays in San Juan Bautista

Hotel Fenix

Hotel La Casona

Amazon Lodge Varillal

Studio 69

La Posada Del Cauchero Hotel & Suites

Alojamiento Casa Luna

Frequently asked questions

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