Top 10 Hotels in San Juan Bautista (from $17) 2026 - Competitive Prices

Go beyond your typical stay in San Juan Bautista

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Our top choices for San Juan Bautista hotels

A wooden deck with railings leading to a pool area, surrounded by lush greenery.

A swimming pool with a person in the water, surrounded by lush greenery and a palm tree.

A wooden building with a door labeled "Joe," a mural of a hummingbird and flowers, and a wooden bench outside.

A wooden corridor with a sign indicating a bar, a woven wall hanging, and a concrete pathway leading to outdoor seating.

1. Pura Chata Ecolodge

San Juan Bautista

$91 nightly

$91 total

Oct 17 - Oct 18

A building surrounded by dense tropical foliage, with a white exterior and large windows.

A spacious restaurant with high ceilings, large windows, and a rustic metal roof. Tables are arranged for dining, and there are ceiling fans and a TV mounted on the wall.

A bedroom with a bed, a wooden headboard, a staircase, and a mirror.

2. Amazon Lodge Varillal

San Juan Bautista

$38 nightly

$38 total

Oct 17 - Oct 18

A wooden rocking chair and a table with a mug under a thatched roof structure, overlooking a pond and lush greenery.

A forested path with a dirt trail, surrounded by dense green foliage and trees.

A room with a bed, a table, chairs, and a shelf with items.

A thatched-roof structure surrounded by dense tropical foliage.

3. Amaca Eco Station

San Juan Bautista

$37 nightly

$37 total

Oct 25 - Oct 26

A modern hallway with a red sofa, a wooden door, and a green pillar.

A multi-story building with a green base and red accents, featuring balconies and air conditioning units.

A woman sitting on a brown leather sofa, reading a book, with a glass coffee table in front of her. There are potted plants around the room.

A modern hallway with a red sofa, a green pillar, and a wooden door.

4. Hospedaje Las Amazonas

San Juan Bautista

Mircea

$17 nightly

$17 total

Oct 17 - Oct 18

A group of people seated at a table with food and drinks, in a room with a wooden wall and a window.

A person sitting on a wooden dock by a body of water with trees in the background.

A rustic building with a thatched roof and a sign reading 'R TOUR.'

A building with two blue doors, one with a sign indicating a men's and women's restroom.

5. ayatur lodge iquitos

Fernando Lores

$66 nightly

$66 total

Oct 25 - Oct 26

A hotel room with two beds, a wooden headboard, a wardrobe, and a view of the outside.

A room with a whiteboard filled with handwritten notes, a wooden door, and a small table with a plant.

A courtyard with a hammock, potted plants, and a water tank in the background.

A covered outdoor area with a wooden floor leading to a garden. There are potted plants and a chair.

6. La Casa del Paucar

Iquitos City Center

RONALD

$23 nightly

$23 total

Oct 17 - Oct 18

A traditional wooden house with a thatched roof, surrounded by lush greenery.

A restaurant setting with a chef preparing food at the counter, a table with various dishes and drinks, and a view of greenery outside.

A thatched-roof structure with a wooden platform, surrounded by greenery.

A room with two beds, a wooden floor, a ceiling fan, and a view of greenery outside.

7. Muyuna Lodge

Fernando Lores

Lorna

$648 nightly

$648 total

Oct 17 - Oct 18

A dining table set with plates, cutlery, and wine glasses, with a bottle of wine in the center.

A bathroom with wooden walls, a green sink, a toilet, and a shower area.

A thatched-roof hut with a wooden frame, a hammock, and a window with curtains.

A toucan perched on a branch with green leaves and fruit.

8. Amazon Jungle Expeditions Lodge

Iquitos

$229 nightly

$229 total

Oct 18 - Oct 19

A spacious corridor with a polished floor, a large parrot sculpture, and a ceiling with a geometric pattern.

A covered courtyard with a central planter, yellow pillars, and tiled flooring.

A bedroom with a wooden headboard, two beds with white bedding, a painting of a leopard on the wall, and a wooden ceiling.

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

9. Casa del Jaguar

Iquitos

Riccardo

$20 nightly

$20 total

Oct 17 - Oct 18

A wooden deck with a metal railing, a red corrugated roof, and a view of greenery.

A room with a bed, two chairs, a small table, and a window with curtains.

A hotel room with three single beds, green patterned curtains, and a red table.

A hammock suspended in a wooden deck area with a thatched roof and a view of a green landscape.

10. Aventour Amazon Lodge

Iquitos City Center

$72 nightly

$72 total

Oct 17 - Oct 18

A modern building with a balcony, a hanging chair, and a small seating area with cushions.

A modern bedroom with a large bed, a green bathtub, and a view of the outdoors.

A balcony with a view of a river and greenery, a bottle of wine, and a glass on a small table.

11. Hotel de Turistas Iquitos

Iquitos City Center

Julia

$54 nightly

$54 total

Oct 27 - Oct 28

An aerial view of a resort with thatched-roof huts, a swimming pool, and lush greenery.

A row of thatched-roof huts with wooden decks, surrounded by lush greenery and a clear path.

A swimming pool with lounge chairs and thatched-roof huts in the background.

A spacious, open-roofed dining area with wooden furniture and a sign welcoming visitors to Curaka Expeditions Amazon River.

12. Cumaceba Curaka Inn

Belén

Alejandra

$254 nightly

$254 total

Oct 17 - Oct 18

Two single beds with white linens, a nightstand, and wall-mounted lights.

An outdoor swimming pool area with lounge chairs and umbrellas, surrounded by a stone patio.

13. Hotel Embassy Suites

Nauta

Zuleika Valentina

$37 nightly

$37 total

Oct 18 - Oct 19

A traditional thatched-roof structure with wooden walls and a garden area with a stone pathway.

A room with two beds, a chair, and a large plant.

A dining area with tables set for multiple people, chairs, and a water dispenser.

A thatched-roof structure with a wooden deck and glass walls, surrounded by greenery.

14. Amazon Tropical Expeditions

Iquitos

$130 nightly

$130 total

Oct 17 - Oct 18

A nighttime pool area with a modern design, including a unique water feature and seating area.

A spacious indoor area with a high ceiling, large windows, and a wooden floor.

A modern interior with a central seating area, high ceilings, and contemporary furnishings.

A modern interior with a high ceiling, wooden paneling, and contemporary furniture.

15. DoubleTree by Hilton Iquitos

Iquitos City Center

James

$140 nightly

$140 total

Oct 20 - Oct 21

A table with plates of food, a cup of coffee, and a view of a body of water.

A person standing by a calm body of water during sunset.

A hotel room with two beds, a large window with a view of greenery, a ceiling fan, and a mirror on the wall.

16. Milia Amazon Lodge

Iquitos City Center

$131 nightly

$131 total

Oct 18 - Oct 19

A bar area with wooden shelves displaying various bottles and glasses. There are two stools and a potted plant on the counter.

A traditional thatched-roof structure with a green exterior wall and a wooden deck.

17. Amazon Jungle Expeditions Lodge

Fernando Lores

$146 nightly

$146 total

Oct 17 - Oct 18

A modern building with a white facade, multiple windows, and a garage door. There are several palm trees and potted plants in the front yard.

A bedroom with a bed, a chair, a small table, an air conditioner, and a window with curtains.

A modern living room with a sofa, chairs, a coffee table, and a patterned rug.

A spacious hotel lobby with a central reception desk, a polished floor, and a modern ceiling design.

18. Hotel Fenix

Iquitos

WILLIAM

$30 nightly

$30 total

Oct 25 - Oct 26

A dining area with wooden chairs and tables, a person standing near a wall with framed pictures, and a large window with a view.

A hallway with wooden paneling, a hanging light fixture, and a door with a geometric pattern.

A spacious indoor area with multiple wooden tables and chairs, large windows offering views of the outside, and potted plants adding greenery.

A hotel room with a wooden bed, a nightstand, a wooden wardrobe, and a painting on the wall.

19. Hotel Yagua Iquitos

Iquitos City Center

"I would very rarely write anything but positive reviews, but I can’t in good conscience do that here. Staff seemed in general to be disinterested in helping, and also didn’t seem to be able to navigate the computer booking system to find our booking. They also attempted to double charge us (twice) despite being shown receipts from hotels.com! In addition to this, when we requested a room away from the busy and loud main road outside (which prevented a good night’s sleep on our first night), we...

Iarlaith

$37 nightly

$37 total

Oct 17 - Oct 18

A compact kitchen with wooden cabinets, a stainless steel refrigerator, a microwave, and a sink.

A kitchen with wooden cabinets, a stainless steel refrigerator, a sink, and a microwave.

A bedroom with a bed, a nightstand, a wardrobe, and a window with curtains.

A living room with a sofa, a coffee table, and a television mounted on the wall.

20. BELLO ORIENTE

Iquitos

$41 nightly

$41 total

Oct 17 - Oct 18

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Where to stay in San Juan Bautista

Find the best San Juan Bautista areas and neighborhoods for the activities you enjoy most.

AA.HH. El Castañal

AA.HH. El Castañal

Though AA.HH. El Castañal might not have many top sights, you can venture to the surrounding area to see attractions like Plaza José Abelardo Quiñones and Amazon Golf Course.

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Stay near popular San Juan Bautista attractions

Plaza José Abelardo Quiñones

8.4/10 (9 reviews)

Explore the great outdoors at Plaza José Abelardo Quiñones, a lovely green space in San Juan Bautista.

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Quistococha Lake

8.0/10 (16 reviews)

Explore the great outdoors at Quistococha Lake, a lovely green space in San Juan Bautista. While you're in the area, stroll along the riverfront.

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Amazon Rescue Center

8.8/10 (6 reviews)

Enjoy an outing to Amazon Rescue Center during your stay in Varillal.

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Mall Aventura

You can enjoy retail therapy at Mall Aventura during your trip to San Juan Bautista.

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El Encanto de Laguna Waterpark

8.0/10 (3 reviews)

Explore the great outdoors at El Encanto de Laguna Waterpark, a lovely green space in San Juan Bautista.

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Aquarium of the Amazon

Take the kids to visit the sea creatures at Aquarium of the Amazon during your trip to San Juan Bautista.

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Amazon Golf Course

8.0/10 (3 reviews)

Enjoy a round of golf in San Juan Bautista at Amazon Golf Course. While you're in the area, stroll along the riverfront.

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Laguna Quistacocha

Find out about the history of San Juan Bautista with a stop at Laguna Quistacocha. While you're in the area, stroll along the riverfront.

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Top San Juan Bautista Hotel Reviews

Victoria Regia Hotel

8/10 Good

"We need more towels shampoo conditioner and the other things was good the food very nice"

CASA BLANCA HOTEL

10/10 Excellent

"So it’s not right next to central Iquitos, but that doesn’t matter. Central is a quick moto taxi ride for very cheap, or a 15-20 minute walk. What matters to me is how nice this place was. Iquitos is a rowdy town. It’s lively with a lot of hustle and bustle. This property is not: it is serene. I loved it so much, I ended up staying an extra night. It’s calm, relaxing, and downright beautiful. Right when you walk in, you are met with a beautiful courtyard that centers a gorgeous pool. There’s a small bar and restaurant, excursion services, and a 24 hour service concierge. My bed was comfy and the hotel is quiet and filled with beautiful flowers and trees and plants (yes inside the hotel). Will stay again 100%. Ps. The staff were all incredible. Such cool people!"

Poseidon Guest House

10/10 Excellent

"We had a much delayed flight, arriving to Iquitos after midnight, but Wilson was waiting there to pick us up! That was very much appreciated after the flight stress/troubles. He gave us a free (very short) ride to the hotel, where he said we didn’t have to do the checkin/payment until next day since we wanted to get sleep. The room was clean and spacious and the shower water was hot. We had a deep sleep. Next morning, breakfast was ready at the requested time and was tasty eggs and bread with fresh juice. Dining area was clean and homey. Checkin/Checkout with Wilson was seamless and quick! Thought we didn’t have much time to experience the hotel, it was a wonderful stay."

More cheap stays in San Juan Bautista

Hotel Fenix

Pasaje Angel Brusco 172-174 Iquitos Loreto

$30 nightly

$30 total

Oct 25 - Oct 26

Amazon Lodge Varillal

Carretera Iquitos Nauta 137 km San Juan Bautista Iquitos

$38 nightly

$38 total

Oct 17 - Oct 18

Hotel La Casona

Avenida Fitzcarrald 147 Iquitos Loreto

$45 nightly

$45 total

Oct 18 - Oct 19

Studio 69

Jr. Pevas 669 Iquitos Loreto

$46 nightly

$46 total

Nov 15 - Nov 16

9.2/10 Wonderful! (88 reviews)

La Posada Del Cauchero Hotel & Suites

449 Antonio Raimondi Iquitos Loreto

$57 nightly

$57 total

Oct 17 - Oct 18

8.8/10 Excellent! (13 reviews)

Alojamiento Casa Luna

727 Jirón Rufino Echenique Iquitos Loreto

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Frequently asked questions

What's the best place to stay in San Juan Bautista?

Based on our traveler data, Amazon Lodge Varillal is one of the top choices for your stay. This hotel offers 2 restaurants and free breakfast. Other good choices for your stay include Hospedaje Las Amazonas and Hotel Sombrero de Paja. See all available top hotels, or vacation rentals in San Juan Bautista.

What's the top vacation rental in San Juan Bautista?

Iquitos Lodge House by the River. Enjoy the views & sound of the Amazon: This highly rated vacation home rental in San Juan Bautista offers an outdoor pool, a garden, and a barbecue grill to help you feel perfectly comfortable in your new surroundings. It has 5 bedrooms as well as a kitchen with a fridge, a stovetop, and a microwave, so you can cook with friends or family. See all vacation rentals in San Juan Bautista.

If I need to cancel my hotel reservation in San Juan Bautista, will I receive a refund?

Yes! You'll find that most hotel reservations are refundable provided that you cancel before the hotel's cancellation deadline, which is often 24 or 48 hours before your scheduled arrival. If your reservation is non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in San Juan Bautista.

Where can I learn more about changing or cancelling my trip to San Juan Bautista?

For more details about picking new dates or cancelling your trip to San Juan Bautista, go to https://www.expedia.com/service/.

What's the best place to stay on a budget in San Juan Bautista?

Based on our traveler reviews, Hospedaje Las Amazonas is a top choice for a less expensive stay. View all budget hotels in San Juan Bautista.

What's the best pet-friendly accommodation in San Juan Bautista?

Amazon Lodge Varillal is a top hotel for people traveling with their pets, and offers 2 restaurants and TVs for its human guests. Two other good options for you and your pet's trip include Pura Chata Ecolodge and Casa kukama lodge. See more pet-friendly hotel accommodations in San Juan Bautista.

What are some accommodations with pools in San Juan Bautista?

Hotel Parthenon is a top hotel with a pool, free breakfast, and free WiFi. Poseidon Guest House is an additional hotel with an onsite pool. View all hotels with pools in San Juan Bautista.

What is the best spa hotel in San Juan Bautista?

Iquitos See all spa hotels in San Juan Bautista.

What is staying in San Juan Bautista like?

Travelers to San Juan Bautista will find plenty to explore and enjoy. In San Juan Bautista, there are 17 hotels and other accommodations to choose from. Find out more about San Juan Bautista.

What should I see while I'm in San Juan Bautista?

The picturesque setting of Plaza José Abelardo Quiñones and Quistococha Lake exemplify the area's natural beauty. A couple of additional sights to add to your agenda are Amazon Rescue Center and El Encanto de Laguna Waterpark. Check out what more to see and do in Expedia's San Juan Bautista guide.

What's the seasonal weather like in San Juan Bautista?

The hottest months are usually September and October with an average temp of 79°F, while the coldest months are July and June with an average of 77°F. The rainiest months in San Juan Bautista are March, April, January, and December, with each month seeing an average of 14 inches of rainfall.

Find hotels in San Juan Bautista from $17

Go beyond your typical stay in San Juan Bautista

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for San Juan Bautista hotels

1. Pura Chata Ecolodge

2. Amazon Lodge Varillal

3. Amaca Eco Station

4. Hospedaje Las Amazonas

5. ayatur lodge iquitos

6. La Casa del Paucar

7. Muyuna Lodge

8. Amazon Jungle Expeditions Lodge

9. Casa del Jaguar

10. Aventour Amazon Lodge

11. Hotel de Turistas Iquitos

12. Cumaceba Curaka Inn

13. Hotel Embassy Suites

14. Amazon Tropical Expeditions

15. DoubleTree by Hilton Iquitos

16. Milia Amazon Lodge

17. Amazon Jungle Expeditions Lodge

18. Hotel Fenix

19. Hotel Yagua Iquitos

20. BELLO ORIENTE

Where to stay in San Juan Bautista

AA.HH. El Castañal

Stay near popular San Juan Bautista attractions

Plaza José Abelardo Quiñones

Quistococha Lake

Amazon Rescue Center

Mall Aventura

El Encanto de Laguna Waterpark

Aquarium of the Amazon

Amazon Golf Course

Laguna Quistacocha

Top San Juan Bautista Hotel Reviews

Victoria Regia Hotel

CASA BLANCA HOTEL

Poseidon Guest House

More cheap stays in San Juan Bautista

Hotel Fenix

Amazon Lodge Varillal

Hotel La Casona

Studio 69

La Posada Del Cauchero Hotel & Suites

Alojamiento Casa Luna

Frequently asked questions

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