Top 10 Hotels in San Juan Bautista (from $17) 2026 - Competitive Prices

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Our top choices for San Juan Bautista hotels

A wooden deck with railings leading to a pool area, surrounded by lush greenery.

A swimming pool with a person in the water, surrounded by lush greenery and a palm tree.

A wooden building with a door labeled "Joe," a mural of a hummingbird and flowers, and a wooden bench outside.

A bed with a blue and white bedspread, two pillows, and a decorative pillow with a red leaf design. There are towels folded on the bed and a small table with a cup and a tissue box.

1. Pura Chata Ecolodge

San Juan Bautista

$91 nightly

$91 total

Sep 27 - Sep 28

A building surrounded by dense tropical foliage, with a white exterior and large windows.

A bedroom with a bed, a wooden headboard, a staircase, and a mirror.

A pathway through a lush garden with dense foliage and a wooden structure in the distance.

2. Amazon Lodge Varillal

San Juan Bautista

$38 nightly

$38 total

Sep 27 - Sep 28

A modern hallway with a red sofa, a wooden door, and a green pillar.

A room with a television displaying 'Hospedaje Las Amazonas' and a table with a white teapot and cup.

A modern hallway with a red sofa, a green pillar, and a wooden door.

A multi-story building with a green base and red accents, featuring balconies and air conditioning units.

3. Hospedaje Las Amazonas

San Juan Bautista

Mircea

$17 nightly

$17 total

Sep 27 - Sep 28

A wooden rocking chair and a table with a mug under a thatched roof structure, overlooking a pond and lush greenery.

A kitchen with wooden cabinets, a sink, and various kitchen utensils.

A room with a bed, a table, chairs, and a shelf with items.

A thatched-roof structure surrounded by dense tropical foliage.

4. Amaca Eco Station

San Juan Bautista

$38 nightly

$38 total

Sep 28 - Sep 29

A thatched-roof hut with a wooden frame, a hammock, and a window with curtains.

A wooden dining table set with plates, glasses, and a bottle, surrounded by chairs in a covered outdoor area with a view of greenery.

5. Amazon Jungle Expeditions Lodge

Iquitos

$208 nightly

$208 total

Oct 27 - Oct 28

A group of people seated at a table with food and drinks, in a room with a wooden wall and a window.

A room with two beds, wooden flooring, and a window with a view.

A building with two blue doors, one with a sign indicating a men's and women's restroom.

A rustic building with a thatched roof and a sign reading 'R TOUR.'

6. ayatur lodge iquitos

Fernando Lores

$66 nightly

$66 total

Sep 28 - Sep 29

A spacious corridor with a polished floor, a large parrot sculpture, and a ceiling with a geometric pattern.

A bedroom with a wooden headboard, two beds with white bedding, a painting of a leopard on the wall, and a wooden ceiling.

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A room with a patterned floor, a ceiling fan, framed artwork, and a glass display case with items.

7. Casa del Jaguar

Iquitos

Riccardo

$20 nightly

$20 total

Sep 27 - Sep 28

A traditional wooden house with a thatched roof, surrounded by lush greenery.

A person in a boat on a calm river, surrounded by lush greenery and a cloudy sky.

A thatched-roof structure with a wooden platform, surrounded by greenery.

A restaurant setting with a chef preparing food at the counter, a table with various dishes and drinks, and a view of greenery outside.

8. Muyuna Lodge

Fernando Lores

Lorna

$648 nightly

$648 total

Oct 4 - Oct 5

Three bottles of Double Black whiskey on a table with a promotional display.

An outdoor dining area with tables and chairs, a pool, and a covered seating area.

A spacious, modern hotel lobby with a reception desk, seating area, and large windows.

A hotel with a modern facade, a signboard displaying the word "HOTEL," and a variety of national flags hanging outside.

9. Hotel Embassy Suites

Nauta

$35 nightly

$35 total

Oct 1 - Oct 2

A neatly made bed with a wooden headboard, a small bedside table with a plant, and a view of a balcony with potted plants.

A restaurant with a kitchen area, dining tables, chairs, and potted plants.

A compact kitchen with wooden cabinets, a refrigerator, a microwave, and a small dining area with two chairs and a table.

A reception area with a wooden reception desk, two potted plants, a white bench, and a door leading outside.

10. Studio 69

Iquitos City Center

William

$38 nightly

$38 total

Sep 27 - Sep 28

A room with a whiteboard filled with handwritten notes, a wooden door, and a small table with a plant.

A reception desk with various items and notices on the wall behind it.

A room with a bed, a small table, a chair, and a hanging light fixture.

A covered outdoor area with a wooden floor leading to a garden. There are potted plants and a chair.

11. La Casa del Paucar

Iquitos City Center

Hunter

$20 nightly

$20 total

Oct 4 - Oct 5

An indoor swimming pool with a rock wall, seating area, and umbrellas.

A dining table set with plates, cutlery, and wine glasses, with a bottle and salt shaker in the center.

A modern hotel lobby with a reception desk, seating area, and decorative plants.

A modern building with a staircase leading to an upper level, a glass entrance, and a well-lit exterior at night.

12. El Dorado Classic Hotel

Iquitos City Center

jorge moreno

$48 nightly

$48 total

Sep 27 - Sep 28

A room with a wooden shelf holding various items, a window with curtains, a table with chairs, and several potted plants.

A living room with an orange sofa, a small round table, and two paintings on the wall.

A multi-level interior with potted plants on the walls, a spiral staircase with orange railings, and a patterned floor design.

The exterior of La Casona Hotel with a stone facade, wooden entrance doors, and a sign above the entrance.

13. Hotel La Casona

Iquitos City Center

Patricia

$32 nightly

$32 total

Oct 4 - Oct 5

A spacious room with checkered flooring, wicker furniture, and potted plants.

A pool area with a staircase leading to a balcony, surrounded by white walls and potted plants.

A white building with blue trim and a sign that reads "Casa de Corvos."

A library with wooden bookshelves, a checkered floor, and a dining table with chairs.

14. Apart Hotel Casa Morey

Iquitos City Center

Julia

$53 nightly

$53 total

Oct 13 - Oct 14

A modern building with a white facade, multiple windows, and a garage door. There are several palm trees and potted plants in the front yard.

A modern bathroom with a large mirror, a wooden door, and a staircase with a metal railing.

A spacious hotel lobby with a central reception desk, a polished floor, and a modern ceiling design.

A bedroom with a bed, a chair, a small table, an air conditioner, and a window with curtains.

15. Hotel Fenix

Iquitos

WILLIAM

$30 nightly

$30 total

Oct 27 - Oct 28

A compact kitchen with wooden cabinets, a stainless steel refrigerator, a microwave, and a sink.

A bedroom with a bed, a nightstand, a wardrobe, and a window with curtains.

A kitchen with wooden cabinets, a stainless steel refrigerator, a sink, and a microwave.

A living room with a sofa, a coffee table, and a television mounted on the wall.

16. BELLO ORIENTE

Iquitos

$41 nightly

$41 total

Sep 27 - Sep 28

A nighttime pool area with a modern design, including a unique water feature and seating area.

A modern interior with a central seating area, high ceilings, and contemporary furnishings.

A modern bar area with wooden furniture, a central bar counter, and a variety of liquor bottles.

A spacious indoor area with a high ceiling, large windows, and a wooden floor.

17. DoubleTree by Hilton Iquitos

Iquitos City Center

James

$140 nightly

$140 total

Sep 29 - Sep 30

A traditional thatched-roof structure with a green exterior wall and a wooden deck.

A dining table set with plates, cutlery, and wine glasses, with a bottle of wine in the center.

18. Amazon Jungle Expeditions Lodge

Fernando Lores

$125 nightly

$125 total

Oct 27 - Oct 28

A modern building with a balcony, a hanging chair, and a small seating area with cushions.

A balcony with a view of a river and greenery, a bottle of wine, and a glass on a small table.

A modern bedroom with a large bed, a green bathtub, and a view of the outdoors.

19. Hotel de Turistas Iquitos

Iquitos City Center

Julia

$54 nightly

$54 total

Oct 27 - Oct 28

A hotel with a swimming pool, outdoor seating, and a staircase leading to the upper level.

A hotel room with a bed, a window with curtains, a painting on the wall, and a door leading to an outdoor area.

A spacious living room with a large painting of a cityscape, a bookshelf filled with books, and a modern ceiling fan.

20. CASA BLANCA HOTEL

Morona Cocha

Miguel

$46 nightly

$46 total

Oct 1 - Oct 2

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Where to stay in San Juan Bautista

Find the best San Juan Bautista areas and neighborhoods for the activities you enjoy most.

AA.HH. El Castañal

AA.HH. El Castañal

Though AA.HH. El Castañal might not have many top sights, you can venture to the surrounding area to see attractions like Mall Aventura and Plaza José Abelardo Quiñones.

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Stay near popular San Juan Bautista attractions

Plaza José Abelardo Quiñones

8.4/10 (9 reviews)

Explore the great outdoors at Plaza José Abelardo Quiñones, a lovely green space in San Juan Bautista.

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Amazon Rescue Center

8.8/10 (6 reviews)

Enjoy an outing to Amazon Rescue Center during your stay in Varillal.

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Mall Aventura

You can enjoy retail therapy at Mall Aventura during your trip to San Juan Bautista.

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Quistococha Lake

8.0/10 (16 reviews)

Explore the great outdoors at Quistococha Lake, a lovely green space in San Juan Bautista. While you're in the area, stroll along the riverfront.

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Aquarium of the Amazon

Take the kids to visit the sea creatures at Aquarium of the Amazon during your trip to San Juan Bautista.

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El Encanto de Laguna Waterpark

8.0/10 (3 reviews)

Explore the great outdoors at El Encanto de Laguna Waterpark, a lovely green space in San Juan Bautista.

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Amazon Golf Course

8.0/10 (3 reviews)

Enjoy a round of golf in San Juan Bautista at Amazon Golf Course. While you're in the area, stroll along the riverfront.

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Laguna Quistacocha

Find out about the history of San Juan Bautista with a stop at Laguna Quistacocha. While you're in the area, stroll along the riverfront.

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Top San Juan Bautista Hotel Reviews

Hotel de Turistas Iquitos

10/10 Excellent

"Lovely hotel with rooftop pool and bar with fabulous views. Staff are very helpful. Excellent breakfast. Free welcome drink."

Hotel La Casona

10/10 Excellent

"Adorable!!! Great location and such a boutique feel. The rooms were good size, the had water in the lobby for us. The staff was super friendly and quick check in, they took us to our rooms, insisted on taking our bags for us (two rooms). We declined cleaning our rooms the next day and just requested towels, they were delivered quickly. The location was great, I am so glad we picked this place!"

Hotel Marañón

10/10 Excellent

"Clean, modern with a beautiful pool."

Studio 69

8/10 Good

"Nice hotel. Everything worked. Note: they charge a 10% Expedia booking fee along with a ridiculous exchange rate. We settled on using the actual exchange rate and 4%."

El Dorado Classic Hotel

10/10 Excellent

"We had a great stay at the El Dorado Classic Hotel in Iquitos. The hotel was clean, modern, and comfortable overall, and it was a very nice place to stay before and after our time in the Amazon. Our room was clean and comfortable, the beds were very nice, and the air conditioning worked well, which was especially appreciated in the Iquitos heat. The hotel itself felt well maintained and modern, and the pool was a great place to relax. We also enjoyed the free breakfast, which was good and convenient before heading out for the day. Overall, the hotel had everything we needed for a comfortable and easy stay in Iquitos. We also want to give special recognition to Diego, the bartender and waiter. He was always attentive, friendly, and welcoming, and he always had a big smile. Diego helped make our stay even more enjoyable with his great attitude and excellent service. Overall, we had a very positive experience at El Dorado Classic Hotel and would recommend it to travelers staying in Iquitos who want a clean, comfortable, and convenient hotel with friendly service."

Poseidon Guest House

10/10 Excellent

"We had a much delayed flight, arriving to Iquitos after midnight, but Wilson was waiting there to pick us up! That was very much appreciated after the flight stress/troubles. He gave us a free (very short) ride to the hotel, where he said we didn’t have to do the checkin/payment until next day since we wanted to get sleep. The room was clean and spacious and the shower water was hot. We had a deep sleep. Next morning, breakfast was ready at the requested time and was tasty eggs and bread with fresh juice. Dining area was clean and homey. Checkin/Checkout with Wilson was seamless and quick! Thought we didn’t have much time to experience the hotel, it was a wonderful stay."

More cheap stays in San Juan Bautista

Hotel Fenix

Pasaje Angel Brusco 172-174 Iquitos Loreto

$30 nightly

$30 total

Oct 27 - Oct 28

Hotel La Casona

Avenida Fitzcarrald 147 Iquitos Loreto

$32 nightly

$32 total

Oct 4 - Oct 5

8.6/10 Excellent! (143 reviews)

Amazon Lodge Varillal

Carretera Iquitos Nauta 137 km San Juan Bautista Iquitos

$38 nightly

$38 total

Sep 27 - Sep 28

Studio 69

Jr. Pevas 669 Iquitos Loreto

$38 nightly

$38 total

Sep 27 - Sep 28

9.2/10 Wonderful! (87 reviews)

La Posada Del Cauchero Hotel & Suites

449 Antonio Raimondi Iquitos Loreto

$47 nightly

$47 total

Oct 13 - Oct 14

8.8/10 Excellent! (13 reviews)

Alojamiento Casa Luna

727 Jirón Rufino Echenique Iquitos Loreto

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Frequently asked questions

What's the best place to stay in San Juan Bautista?

Based on our traveler data, Amazon Lodge Varillal is one of the top choices for your stay. This hotel offers 2 restaurants and free breakfast. Other good choices for your stay include Hospedaje Las Amazonas and Hotel Sombrero de Paja. See all available top hotels, or vacation rentals in San Juan Bautista.

What's the top vacation rental in San Juan Bautista?

Iquitos Lodge House by the River. Enjoy the views & sound of the Amazon: This highly rated vacation home rental in San Juan Bautista offers an outdoor pool, a garden, and a barbecue grill to help you feel perfectly comfortable in your new surroundings. It has 5 bedrooms as well as a kitchen with a fridge, a stovetop, and a microwave, so you can cook with friends or family. See all vacation rentals in San Juan Bautista.

If I need to cancel my hotel reservation in San Juan Bautista, will I receive a refund?

Yes! You'll find that most hotel reservations are refundable provided that you cancel before the hotel's cancellation deadline, which is often 24 or 48 hours before your scheduled arrival. If your reservation is non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in San Juan Bautista.

Where can I learn more about changing or cancelling my trip to San Juan Bautista?

For more details about picking new dates or cancelling your trip to San Juan Bautista, go to https://www.expedia.com/service/.

What's the best place to stay on a budget in San Juan Bautista?

Based on our traveler reviews, Hospedaje Las Amazonas is a top choice for a less expensive stay. View all budget hotels in San Juan Bautista.

What's the best pet-friendly accommodation in San Juan Bautista?

Amazon Lodge Varillal is a top hotel for people traveling with their pets, and offers 2 restaurants and TVs for its human guests. Two other good options for you and your pet's trip include Pura Chata Ecolodge and Casa kukama lodge. See more pet-friendly hotel accommodations in San Juan Bautista.

What are some accommodations with pools in San Juan Bautista?

Hotel Parthenon is a top hotel with a pool, free breakfast, and free WiFi. Poseidon Guest House is an additional hotel with an onsite pool. View all hotels with pools in San Juan Bautista.

What is the best spa hotel in San Juan Bautista?

Iquitos See all spa hotels in San Juan Bautista.

What is staying in San Juan Bautista like?

Travelers to San Juan Bautista will find plenty to explore and enjoy. In San Juan Bautista, there are 17 hotels and other accommodations to choose from. Find out more about San Juan Bautista.

What should I see while I'm in San Juan Bautista?

Favorite places to visit include Plaza José Abelardo Quiñones, Amazon Rescue Center, and Mall Aventura. A couple of additional sights to add to your agenda are El Encanto de Laguna Waterpark and Aquarium of the Amazon. Check out what more to see and do in Expedia's San Juan Bautista guide.

What's the seasonal weather like in San Juan Bautista?

The hottest months are usually September and October with an average temp of 79°F, while the coldest months are July and June with an average of 77°F. The rainiest months in San Juan Bautista are March, April, January, and December, with each month seeing an average of 14 inches of rainfall.

Find hotels in San Juan Bautista from $17

Upfront pricing

Treat yourself

Be picky

Go beyond your typical stay in San Juan Bautista

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for San Juan Bautista hotels

1. Pura Chata Ecolodge

2. Amazon Lodge Varillal

3. Hospedaje Las Amazonas

4. Amaca Eco Station

5. Amazon Jungle Expeditions Lodge

6. ayatur lodge iquitos

7. Casa del Jaguar

8. Muyuna Lodge

9. Hotel Embassy Suites

10. Studio 69

11. La Casa del Paucar

12. El Dorado Classic Hotel

13. Hotel La Casona

14. Apart Hotel Casa Morey

15. Hotel Fenix

16. BELLO ORIENTE

17. DoubleTree by Hilton Iquitos

18. Amazon Jungle Expeditions Lodge

19. Hotel de Turistas Iquitos

20. CASA BLANCA HOTEL

Where to stay in San Juan Bautista

AA.HH. El Castañal

Stay near popular San Juan Bautista attractions

Plaza José Abelardo Quiñones

Amazon Rescue Center

Mall Aventura

Quistococha Lake

Aquarium of the Amazon

El Encanto de Laguna Waterpark

Amazon Golf Course

Laguna Quistacocha

Top San Juan Bautista Hotel Reviews

Hotel de Turistas Iquitos

Hotel La Casona

Hotel Marañón

Studio 69

El Dorado Classic Hotel

Poseidon Guest House

More cheap stays in San Juan Bautista

Hotel Fenix

Hotel La Casona

Amazon Lodge Varillal

Studio 69

La Posada Del Cauchero Hotel & Suites

Alojamiento Casa Luna

Frequently asked questions

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