Photo by Sig

Find hotels near Boot Key Harbor, Marathon from $101

Start date: Check-in selected.
To Date
End date: Check-out

  • Upfront pricing

    Our total price for your stay includes taxes and fees

  • Treat yourself

    Save 10% or more on over 100,000 hotels worldwide with Member Prices
    Learn about One Key

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
Nov 19 - Nov 20
Tomorrow
Nov 20 - Nov 21
This weekend
Nov 21 - Nov 23
Next weekend
Nov 28 - Nov 30

Filter by

Guest rating
Guest rating
Star rating

Compare 1,979 hotels close to Boot Key Harbor with room rates, reviews, and availability. Most hotels are fully refundable.

42-inch Smart TV with digital channels, Netflix, Hulu
Yacht Haven Marina

Yacht Haven Marina

3.5 star property
1.4 mi from Boot Key Harbor
9.8 out of 10, Exceptional, (224)
"Nice Lodge nice area close to grocery store & shops, will love to stay there again."
United States
Xiomeidy
$224 nightly
The price is $252
Dec 1 - Dec 2
Total with taxes and fees
Yacht Haven Marina
2 outdoor pools, free cabanas, pool umbrellas
Courtyard by Marriott Faro Blanco Resort

Courtyard by Marriott Faro Blanco Resort

3.0 star property
0.5 mi from Boot Key Harbor
9.2 out of 10, Wonderful, (1000)
"Nice hotel"
United States
Ivonne
$186 nightly
The price is $209
Nov 24 - Nov 25
Total with taxes and fees
Courtyard by Marriott Faro Blanco Resort
View from property
Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway

3.0 star property
0.8 mi from Boot Key Harbor
9.0 out of 10, Wonderful, (1011)
"Staff was great, room was super clean AND location was perfect. "
United States
Grace
$98 nightly
The price is $111
Nov 20 - Nov 21
Total with taxes and fees
Captain Pips Marina & Hideaway
Premium bedding, soundproofing, iron/ironing board, free WiFi
Knight's Key Suites

Knight's Key Suites

3.0 star property
1.7 mi from Boot Key Harbor
9.0 out of 10, Wonderful, (1155)
"Room were clean and staff was very helpful "
United States
Leonard
$128 nightly
The price is $141
Nov 30 - Dec 1
Total with taxes and fees
Knight's Key Suites
3 outdoor pools, sun loungers
Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort

4.0 star property
0.4 mi from Boot Key Harbor
8.8 out of 10, Excellent, (1000)
"Staff was very helpful, you got everything you need in one place. "
United States
Diego
$304 nightly
The price is $342
Nov 21 - Nov 22
Total with taxes and fees
Tranquility Bay Beachfront Hotel and Resort
4 outdoor pools, pool umbrellas, sun loungers
Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton

Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton

4.0 star property
0.6 mi from Boot Key Harbor
8.8 out of 10, Excellent, (1276)
"Great place to stay, extremely pet friendly for those like me who want to travel with their pets. "
United States
James
$229 nightly
The price is $258
Nov 30 - Dec 1
Total with taxes and fees
Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton
Marina
Skipjack Resort & Marina

Skipjack Resort & Marina

3.0 star property
1.1 mi from Boot Key Harbor
8.6 out of 10, Excellent, (1209)
"Had a great time in Marathon. Nice accommodations, very friendly staff."
Canada
Brenda
$215 nightly
The price is $242
Nov 20 - Nov 21
Total with taxes and fees
Skipjack Resort & Marina
Exterior
Tropical Cottages

Tropical Cottages

3.0 star property
1.8 mi from Boot Key Harbor
8.6 out of 10, Excellent, (903)
"Beautiful place, conveniently located "
United States
Clifton
$95 nightly
The price is $107
Nov 20 - Nov 21
Total with taxes and fees
Tropical Cottages
Ocean views, open select days
Banana Bay Resort & Marina

Banana Bay Resort & Marina

3.0 star property
1 mi from Boot Key Harbor
7.6 out of 10, Good, (1005)
"the room was nice and clean, they had a beautiful outdoor area and marina with a little tiki bar "
United States
Brenda
$145 nightly
The price is $164
Nov 27 - Nov 28
Total with taxes and fees
Banana Bay Resort & Marina
BBQ/picnic area
Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay

3.5 star property
2.4 mi from Boot Key Harbor
9.6 out of 10, Exceptional, (192)
"Clean room, spacious, nice and quiet. "
United States
Douglas
$256 nightly
The price is $288
Nov 30 - Dec 1
Total with taxes and fees
Aqua Lodge Rentals At Coconut Cay
Aerial view
Seascape Resort & Marina

Seascape Resort & Marina

3.0 star property
2.5 mi from Boot Key Harbor
9.4 out of 10, Exceptional, (547)
"Staff was incredible, super clean, great location, amenities were perfect. Thank you so much!!"
United States
Laura E
$192 nightly
The price is $216
Nov 21 - Nov 22
Total with taxes and fees
Seascape Resort & Marina
Gazebo
Bonefish Bay Motel

Bonefish Bay Motel

2.5 star property
5 mi from Boot Key Harbor
9.2 out of 10, Wonderful, (476)
"Amazing hotel"
United States
cindy
$116 nightly
The price is $131
Dec 2 - Dec 3
Total with taxes and fees
Bonefish Bay Motel
Exterior
Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club

2.5 star property
9.7 mi from Boot Key Harbor
9.4 out of 10, Exceptional, (342)
"Great staff, check in, site tour and dinner in the restaurant."
United States
David
$206 nightly
The price is $231
Dec 14 - Dec 15
Total with taxes and fees
Grassy Flats Resort & Beach Club
Property amenity
Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys

2.5 star property
5.2 mi from Boot Key Harbor
9.2 out of 10, Wonderful, (1025)
"Great hotel, highly recommended!"
United States
Gerry
$134 nightly
The price is $151
Nov 20 - Nov 21
Total with taxes and fees
Fairfield Inn & Suites by Marriott Marathon Florida Keys
Outdoor pool, pool umbrellas, sun loungers
Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys

2.5 star property
5.3 mi from Boot Key Harbor
9.0 out of 10, Wonderful, (1005)
"Super clean, great service from staff "
United States
Mariela
$139 nightly
The price is $157
Dec 1 - Dec 2
Total with taxes and fees
Hampton Inn Marathon - Florida Keys
Premium Room, 1 King Bed, Lanai, Lagoon View (Kitchenette) | View from room
Kingsail Resort

Kingsail Resort

2.0 star property
2.2 mi from Boot Key Harbor
8.6 out of 10, Excellent, (1032)
"Good staf "
United States
Erasmo
$98 nightly
The price is $110
Nov 26 - Nov 27
Total with taxes and fees
Kingsail Resort
Exterior
Coconut Cay Resort & Marina

Coconut Cay Resort & Marina

2.0 star property
2.3 mi from Boot Key Harbor
8.4 out of 10, Very Good, (1001)
"I found this was a very nice place to stay. Free kayaks, nice pool, helpful staff."
Australia
Peter
$117 nightly
The price is $131
Nov 23 - Nov 24
Total with taxes and fees
Coconut Cay Resort & Marina
Exterior
Gulf View Waterfront Resort

Gulf View Waterfront Resort

2.5 star property
10.2 mi from Boot Key Harbor
8.6 out of 10, Excellent, (516)
"Spotless room, comfy, and check in so easy. Love the place definitely going back."
United States
Frank
$90 nightly
The price is $101
Nov 20 - Nov 21
Total with taxes and fees
Gulf View Waterfront Resort
View from room
Rainbow Bend Resort

Rainbow Bend Resort

2.5 star property
9.3 mi from Boot Key Harbor
8.2 out of 10, Very Good, (766)
"Wonderful hideaway right in the middle of all the fun!"
United States
Guilhermina
$113 nightly
The price is $128
Nov 25 - Nov 26
Total with taxes and fees
Rainbow Bend Resort
5 outdoor pools, cabanas (surcharge), pool umbrellas
Hawks Cay Resort

Hawks Cay Resort

4.0 star property
12.7 mi from Boot Key Harbor
8.0 out of 10, Very Good, (1005)
"Enjoyed a few days with the kids gere"
United States
Jessica
$368 nightly
The price is $413
Nov 30 - Dec 1
Total with taxes and fees
Hawks Cay Resort
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Boot Key Harbor Hotel Reviews

Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa

10/10 Excellent
"Rooms and property were very clean . "
Jessica 4-night trip
Posted 10 hours ago
Isla Bella Beach Resort & Spa

Hotels near other Boot Key Harbor attractions

This is Zippy. He lives at The Turtle Hospital on Marathon Key in Florida. This facility is doing great things to rehabilitate sea turtles that have been injure by boat strike or interactions with sharks or humans. More details ---> http://turtlestravel.com/hospital-turtles/
Photo by TurtlesTravel
Open Photo by TurtlesTravel

The Turtle Hospital

4.5/5 (467 reviews)
Explore the campus of The Turtle Hospital during your stay in Marathon. Stroll along the area's beautiful beaches, or simply savor its seafood restaurants.
See properties
Miami Key Biscayne Golf tropical field

Florida Keys Country Club

4.0/5 (66 reviews)
Play a round of golf in Marathon at Florida Keys Country Club, and enjoy other activities such as running. Stroll along the area's beautiful beaches, or simply savor its seafood restaurants.
See properties

Frequently asked questions

What's the area like around Boot Key Harbor?
Boot Key Harbor is located in Marathon. Travelers love the area for its beautiful beaches, top seafood restaurants, and dolphin viewing opportunities. If you're looking for a convenient place to stay, check out the 220 hotels and other accommodations you'll find within a mile.
What's the best hotel to stay near Boot Key Harbor?
Adjacent to Boot Key Harbor, Mermaid Manor Waterfront Haven w Hot Tub Dock is one of the top choices for your stay based on our traveler data, and this vacation home offers free parking. Other good choices within a short distance include Courtyard by Marriott Faro Blanco Resort and Tranquility Bay Beachfront Hotel and Resort.
How many hotels are there close to Boot Key Harbor?
Expedia has 220 hotels and other accommodations within a mile from Boot Key Harbor.
If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?
Yes, you'll find most hotel reservations are fully refundable if you cancel before the hotel's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the "fully refundable" filter to view the top deals on offer near Boot Key Harbor.
Where can I learn more about changing or cancelling my trip in the area near Boot Key Harbor?
To find more details about rescheduling or cancelling your stay near Boot Key Harbor, go to https://www.expedia.com/service/.
What can I see and do near Boot Key Harbor?
Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.