The Best Hotels Closest to Boot Key Harbor in Marathon for 2026

Our top choices for Boot Key Harbor hotels

Yacht Haven Marina

1.4 mi from Boot Key Harbor

Cheryl

$237 nightly

Jun 9 - Jun 10

Total with taxes and fees

On the beach, beach cabanas, sun loungers

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

0.5 mi from Boot Key Harbor

Ana M

$210 nightly

Jun 9 - Jun 10

Total with taxes and fees

Captain Pips Marina & Hideaway

0.8 mi from Boot Key Harbor

sam

$154 nightly

Jun 3 - Jun 4

Total with taxes and fees

On the beach, sun loungers, beach umbrellas, beach towels

Isla Bella Beach Resort & Spa

1.5 mi from Boot Key Harbor

Anna

$309 nightly

Jun 9 - Jun 10

Total with taxes and fees

Premium bedding, soundproofing, iron/ironing board, free WiFi

Knight's Key Suites

1.7 mi from Boot Key Harbor

Raghavan

$111 nightly

Jun 8 - Jun 9

Total with taxes and fees

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

0.6 mi from Boot Key Harbor

Kenier

$201 nightly

Jun 11 - Jun 12

Total with taxes and fees

Skipjack Resort & Marina

1.1 mi from Boot Key Harbor

Randall

$199 nightly

Jun 7 - Jun 8

Total with taxes and fees

Tropical Cottages

1.8 mi from Boot Key Harbor

Andrea

$129 nightly

Jun 4 - Jun 5

Total with taxes and fees

Banana Bay Resort & Marina

1 mi from Boot Key Harbor

Felix

$150 nightly

Jul 2 - Jul 3

Total with taxes and fees

Tranquility Bay Beachfront Hotel and Resort

0.4 mi from Boot Key Harbor

maybelis

$297 nightly

Jun 28 - Jun 29

Total with taxes and fees

Aqua Lodge Rentals At Coconut Cay

2.4 mi from Boot Key Harbor

Stephanie

$362 nightly

Jun 3 - Jun 4

Total with taxes and fees

Private beach, sun loungers, beach towels, kayaking

Seascape Resort & Marina

2.5 mi from Boot Key Harbor

Jeffrey

$249 nightly

Jun 14 - Jun 15

Total with taxes and fees

Premium Room, 1 King Bed, Lanai, Lagoon View (Kitchenette) | View from room

Kingsail Resort

2.2 mi from Boot Key Harbor

Yaiquimi

$107 nightly

Jun 9 - Jun 10

Total with taxes and fees

Bonefish Bay Motel

5 mi from Boot Key Harbor

Han

$131 nightly

Jun 14 - Jun 15

Total with taxes and fees

Fairfield Inn & Suites by Marriott Marathon Florida Keys

5.2 mi from Boot Key Harbor

peggy

$152 nightly

Jun 9 - Jun 10

Total with taxes and fees

Coconut Cay Resort & Marina

2.3 mi from Boot Key Harbor

Donald

$123 nightly

Jun 3 - Jun 4

Total with taxes and fees

Hampton Inn Marathon - Florida Keys

5.3 mi from Boot Key Harbor

Norma

$153 nightly

Jun 14 - Jun 15

Total with taxes and fees

2 outdoor pools, open 8 AM to 9 PM, pool umbrellas, sun loungers

Glunz Ocean Beach Hotel & Resort

5.2 mi from Boot Key Harbor

Angus

$211 nightly

Jun 8 - Jun 9

Total with taxes and fees

Grassy Flats Resort & Beach Club

9.7 mi from Boot Key Harbor

Shonlyn

$297 nightly

Jun 4 - Jun 5

Total with taxes and fees

Siesta Motel

2.4 mi from Boot Key Harbor

EDHAYA CHANDRAN

$108 nightly

Jun 30 - Jul 1

Total with taxes and fees

View all properties

Compare popular hotels close to Boot Key Harbor

Property	Star rating	Guest rating
Yacht Haven Marina	2.0 star property	9.6 Exceptional 319 reviews	View
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys	3.0 star property	9.0 Wonderful 1,001 reviews	View
Captain Pips Marina & Hideaway	3.0 star property	9.0 Wonderful 1,002 reviews	View
Isla Bella Beach Resort & Spa	5.0 star property	9.2 Wonderful 1,165 reviews	View
Knight's Key Suites	3.0 star property	9.0 Wonderful 1,199 reviews	View

Top Boot Key Harbor Hotel Reviews

Banana Bay Resort & Marina

4/10 Poor

"The website was misleading. There was no bar out by the pool. The bar by the oceanfront was supposed to serve food according to the website, but it didn’t. It was only open from 5 to 8. The room had a really bad smell coming out of the air conditioner which maintenance tried to fixed by cleaning the filter, but they just sprayed stuff in it to make it smell fruity for about a day then it went away and went back to the smell. I was there for six nights, smelling it the drain in the bathroom in the shower. Also had a terrible smell coming from it so I will not be going back to the banana day. also, I forgot that they charge you $19 a day for parking which I thought was ridiculous because they weren’t even over booked so there was plenty of parking. It seemed to me like it’s just another way to get more money."

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

6/10 Okay

"The hot tub was not on the property but was accessible through the property next-door, which was a little bit of a walk. Would have given it five stars if it wasn’t for the terrible individual at check-in. I don’t remember his name, but he stayed in the room in the back, not in the front where he belonged. He checked me into a room with no view actually a view with the wood fence could not see anything it felt like a prison cell. Call down to change room and was given a room on the third floor with a much better view of the pool problem solved, but it was and seemed like he didn’t care at all about my concerns or needs. I then ask for two robes to be sent to my room and you sent me two rolls of toilet paper instead so obviously there’s something seriously wrong with somebody who doesn’t care to listen to what you’re saying or your needs. Other than that overall I would go back knowing that I would have to deal with this moron again."

Isla Bella Beach Resort & Spa

10/10 Excellent

"This property is top notch! We are in love and wish we'd found it earlier. Everyone was so nice and helpful. From registration to pool/food attendants, maintenance, . .... Everyone was so nice. The facilities are beautiful and everything you need is there! Highly recommend this resort and if we come to the Keys again, we will absolutely be staying here!!!!!"

Wow!!! Deep Water Canal, Swimspa Pool, Kayaks, Walk to Ocean Front Tiki Bar!!

10/10 Excellent

"I cannot recommend this property enough . The house was pristine, check in is simple, the location is awesome right in the middle of everything but on a very quiet street. The swim spa felt awesome after a long day of sightseeing. The lot across the road was great to hang out at. We used the kayaks almost every day to fish which was a blast lots of small barracuda,tarpon,snapper even a few shark snapped us off. On the very last evening a mom and baby manatee hung out for a bit in the canal.Kathy is very quick to respond. 10/10"

Ocean Side Waterfront Exclusive Affordable Home - Pool , Tennis, Fishing & Golf

10/10 Excellent

"This was our 3rd time staying at this property! We absolutely love it here! Prime location- close to Sombrero beach and Publix. The kids spend countless hours fishing off the sea wall. The kitchen's have everything we need for cooking during our stay. 10/10 recommend "

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

4.6/5 (946 reviews)

Explore the campus of The Turtle Hospital during your stay in Marathon. Stroll along the area's marina, or simply savor its seafood restaurants.

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Frequently asked questions

What's the area like around Boot Key Harbor?

Boot Key Harbor is located in Marathon. Travelers love the area for its beautiful beaches, top seafood restaurants, and dolphin viewing opportunities. If you're looking for a convenient place to stay, check out the 212 hotels and other accommodations you'll find within a mile.

What's the best hotel to stay near Boot Key Harbor?

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys is one of the top choices for your stay based on our traveler data, and this hotel offers 2 outdoor pools and 2 bars. It's located just a short 0.5 mi (0.8 km) from Boot Key Harbor. Other good choices within a short distance include Tranquility Bay Beachfront Hotel and Resort and Faro Blanco Resort Marathon Florida Keys, Curio by Hilton.

How many hotels are there close to Boot Key Harbor?

Expedia has 212 hotels and other accommodations within a mile from Boot Key Harbor.

If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?

Yes, you'll find most hotel reservations are fully refundable if you cancel before the hotel's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the "fully refundable" filter to view the top deals on offer near Boot Key Harbor.

Where can I learn more about changing or cancelling my trip in the area near Boot Key Harbor?

To find more details about rescheduling or cancelling your stay near Boot Key Harbor, go to https://www.expedia.com/service/.

What can I see and do near Boot Key Harbor?

Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.

Find hotels near Boot Key Harbor, Marathon from $120

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Our top choices for Boot Key Harbor hotels

Yacht Haven Marina

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Captain Pips Marina & Hideaway

Isla Bella Beach Resort & Spa

Knight's Key Suites

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Skipjack Resort & Marina

Tropical Cottages

Banana Bay Resort & Marina

Tranquility Bay Beachfront Hotel and Resort

Aqua Lodge Rentals At Coconut Cay

Seascape Resort & Marina

Kingsail Resort

Bonefish Bay Motel

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Coconut Cay Resort & Marina

Hampton Inn Marathon - Florida Keys

Glunz Ocean Beach Hotel & Resort

Grassy Flats Resort & Beach Club

Siesta Motel

Compare popular hotels close to Boot Key Harbor

Top Boot Key Harbor Hotel Reviews

Banana Bay Resort & Marina

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

Frequently asked questions