Three white herons standing among green foliage.

Find hotels near Boot Key Harbor, Marathon from $100

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Oct 26 - Oct 27
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Oct 27 - Oct 28
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Our top choices for Boot Key Harbor hotels

A marina with several docked boats and a row of small, white cabins with blue roofs.
A waterfront property with floating houses connected by a wooden dock.
A modern kitchen with white cabinetry, a wooden countertop, and a built-in microwave.
A modern kitchen with white cabinets, a microwave, and a dining area with a table and chairs.

1. Yacht Haven Marina

Yacht Haven Marina
1.4 mi from Boot Key Harbor
United States
Lauren
$244 nightly
$275 total
Oct 27 - Oct 28
Total with taxes and fees
Yacht Haven Marina
An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.
A beach scene with two white chairs, a hammock, and palm trees.
A bar area with wooden chairs, a bar counter, and a variety of bottles and glasses.
A beach with white chairs and kayaks, palm trees, and a clear view of the ocean.

2. Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa
1.5 mi from Boot Key Harbor
United States
Clinton
$338 nightly
$381 total
Oct 27 - Oct 28
Total with taxes and fees
Isla Bella Beach Resort & Spa
A resort with a swimming pool, lounge chairs, and a view of the ocean.
A wooden dock leading to a marina with boats docked on both sides.
A deck with tables and chairs, overlooking a calm body of water and palm trees.
A resort with a swimming pool, a dock, and a building with multiple balconies.

3. Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
0.7 mi from Boot Key Harbor
United States
Arianna
$204 nightly
$230 total
Oct 29 - Oct 30
Total with taxes and fees
Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
Two hammocks on a sandy beach with a clear blue sky and turquoise water.
A bar area with a view of the ocean, bar stools, umbrellas, and a variety of bottles.
An aerial view of a coastal resort with a marina, palm trees, and a large building complex.
A poolside area with lounge chairs, blue umbrellas, and a fire pit.

4. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
0.5 mi from Boot Key Harbor
United States
amy
$166 nightly
$187 total
Nov 2 - Nov 3
Total with taxes and fees
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
A coastal landscape with clear turquoise waters and a dense tree line under a bright blue sky with scattered clouds.
A beach with a wooden pier, palm trees, and a clear blue sky.
A coastal area with a marina, boats, and a small island with buildings.
An aerial view of a coastal area with a marina, several boats, and a variety of buildings including a large resort with a pool and landscaped areas.

5. Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway
0.8 mi from Boot Key Harbor
United States
michael
$140 nightly
$158 total
Nov 25 - Nov 26
Total with taxes and fees
Captain Pips Marina & Hideaway
A hotel room with two beds, each with a wooden headboard, white bedding, and a bedside table with a lamp.
A hotel room with a bed, a sofa, a coffee table, and a dining table.
A building with a thatched roof and a sign reading 'Sunset Grille & Raw Bar'.
A kitchen with wooden cabinets, a stainless steel refrigerator, a granite countertop, a sink, a microwave, a stove, and a clock.

6. Knight's Key Suites

Knight's Key Suites
1.7 mi from Boot Key Harbor
United States
Brandy
$95 nightly
$105 total
Oct 29 - Oct 30
Total with taxes and fees
Knight's Key Suites
Exterior
A compact bedroom with two beds, a small bathroom, and a view of the outdoors.
A modern kitchen with white cabinets and a built-in microwave.
Sundeck

7. Aqua Lodges at 47th Street Gulfside

Aqua Lodges at 47th Street Gulfside
1.2 mi from Boot Key Harbor
United States
Lauren
$242 nightly
$272 total
Oct 29 - Oct 30
Total with taxes and fees
Aqua Lodges at 47th Street Gulfside
Lobby
A marina with boats docked, a swimming pool, and a building with a blue roof.
A bar area with a long counter, multiple stools, and a view of the marina with boats.
A modern living room with two sofas, a coffee table, and a small side table.

8. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton
0.6 mi from Boot Key Harbor
United States
Rick
$180 nightly
$203 total
Nov 15 - Nov 16
Total with taxes and fees
Faro Blanco Resort Marathon Florida Keys, Curio by Hilton
An outdoor seating area with wicker furniture and cushions, a thatched-roof structure, and lush greenery.
Two small, single-story buildings with a red and yellow exterior, each with a door and windows, and surrounded by greenery and trees.
A food truck parked in a lush garden with a brick pathway, surrounded by various plants and a white fence.
A bedroom with a bed, bedside tables, a TV, and a sliding glass door to the outside.

9. Tropical Cottages

Tropical Cottages
1.8 mi from Boot Key Harbor
United States
Aaron
$89 nightly
$100 total
Oct 27 - Oct 28
Total with taxes and fees
Tropical Cottages
A nighttime pool area with a clear view of the pool, surrounding palm trees, and a building with a sign.
A waterfront property with a swimming pool, palm trees, and a white fence.
A buffet setup with various food items and condiments.
A hotel entrance with a covered walkway, palm trees, and a clear blue sky.

10. Skipjack Resort & Marina

Skipjack Resort & Marina
1.1 mi from Boot Key Harbor
Canada
Justin
$176 nightly
$198 total
Oct 27 - Oct 28
Total with taxes and fees
Skipjack Resort & Marina
Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.
A marina with boats docked, a dock extending into calm waters, and a small island with palm trees.
A beach with lounge chairs, palm trees, and a string of lights.
An aerial view of a marina with multiple boats docked, surrounded by a sandy beach and palm trees.

11. Banana Bay Resort & Marina

Banana Bay Resort & Marina
1 mi from Boot Key Harbor
United States
Alex
$166 nightly
$187 total
Nov 16 - Nov 17
Total with taxes and fees
Banana Bay Resort & Marina
A swimming pool surrounded by palm trees and lounge chairs.
A beach scene with a wooden deck, palm trees, and a gazebo-like structure.
A wooden deck with blue chairs overlooking a beach with palm trees and the ocean.
A spacious living room with a wooden coffee table, a striped sofa, and a television on a wooden cabinet.

12. Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort
0.4 mi from Boot Key Harbor
United Kingdom
Stuart
$264 nightly
$297 total
Nov 16 - Nov 17
Total with taxes and fees
Tranquility Bay Beachfront Hotel and Resort
A beach with palm trees, a sandy path, and beach chairs.
Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.
A compact bedroom with two beds, a small bathroom, and a window with a view of greenery.
A floating houseboat with a covered deck and seating area, docked at a marina.

13. Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay
2.4 mi from Boot Key Harbor
United States
Susan
$227 nightly
$255 total
Oct 27 - Oct 28
Total with taxes and fees
Aqua Lodge Rentals At Coconut Cay
A hammock on a sandy beach with palm trees, a pool, and lounge chairs in the background.
A pool with a view of the ocean and beach chairs.
A beach with palm trees, lounge chairs, and a picnic table.
A wooden pier leading to a dock with boats, a clear sky, and calm water.

14. Seascape Resort & Marina

Seascape Resort & Marina
2.5 mi from Boot Key Harbor
United States
PAOLA
$171 nightly
$192 total
Nov 1 - Nov 2
Total with taxes and fees
Seascape Resort & Marina
A wooden deck with a pool and chairs overlooking a beach with palm trees.
A hotel room with a sofa, a desk, a chair, a TV, and a balcony with curtains.
A pool area with palm trees and a view of the ocean.
A bar area with stools, a counter, and hanging lanterns.

15. Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club
9.7 mi from Boot Key Harbor
United States
Tiffany
$242 nightly
$272 total
Oct 27 - Oct 28
Total with taxes and fees
Grassy Flats Resort & Beach Club
A bar area with a long counter, bar stools, and a view of the water.
A balcony with a view of the ocean, a round table, and two chairs.
A Marriott Fairfield Inn & Suites with a modern design, featuring a covered entrance and palm trees.
A balcony with a view of a body of water, a pool, and outdoor seating.

16. Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys
5.2 mi from Boot Key Harbor
United States
Andrew
$149 nightly
$168 total
Oct 27 - Oct 28
Total with taxes and fees
Fairfield Inn & Suites by Marriott Marathon Florida Keys
A wooden dock leading to a row of boats, with a thatched-roof building and palm trees in the background.
A covered outdoor seating area with tables and chairs, overlooking a body of water and a distant shoreline.
Two bicycles parked on a sandy beach with the ocean in the background.
A bedroom with a bed, two bedside lamps, a glass table, and a view of a balcony with palm trees.

17. Bonefish Bay Motel

Bonefish Bay Motel
5 mi from Boot Key Harbor
United States
Billy
$116 nightly
$131 total
Oct 29 - Oct 30
Total with taxes and fees
Bonefish Bay Motel
Three colorful drinks on a table with a thatched roof and outdoor seating.
A bar area with wicker chairs and a thatched roof, overlooking a body of water with boats.
A pool area with lounge chairs, a thatched-roof structure, and a view of the ocean.
A modern living room with a large sectional sofa, a flat-screen TV, and a view of the sea through large windows.

18. Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys
5.3 mi from Boot Key Harbor
United States
Linda
$149 nightly
$168 total
Oct 27 - Oct 28
Total with taxes and fees
Hampton Inn Marathon - Florida Keys
A pool area with lounge chairs and umbrellas, a thatched-roof structure, and a view of the ocean.
A spacious living area with a view of the ocean, a balcony with a pool, and a staircase leading to another level.
A beach with a palm tree, clear blue water, and a bridge in the distance.
A beach view through a window with white curtains, a wooden deck, and beach chairs.

19. Glunz Ocean Beach Hotel & Resort

Glunz Ocean Beach Hotel & Resort
5.2 mi from Boot Key Harbor
United States
Judy
$182 nightly
$199 total
Oct 28 - Oct 29
Total with taxes and fees
Glunz Ocean Beach Hotel & Resort
A covered outdoor area with a view of a pool and palm trees.
A reception desk with a marble countertop, a Toshiba laptop, a vase with white flowers, and a sign indicating an office.
A hotel room with two beds, white bedding, and a blue accent.
A covered patio with a round table and chairs, large windows, and a view of a street and greenery.

20. Kingsail Resort

Kingsail Resort
2.2 mi from Boot Key Harbor
United States
Nicholas
$92 nightly
$104 total
Oct 28 - Oct 29
Total with taxes and fees
Kingsail Resort
View all properties

Compare popular hotels close to Boot Key Harbor

Property
Star rating
Guest rating
Breakfast included
Pool
Spa
Pet friendly
WiFi included
A marina with several docked boats and a row of small, white cabins with blue roofs.
Yacht Haven Marina
9.6
Exceptional
374 reviews
View
An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.
Isla Bella Beach Resort & Spa
9.2
Wonderful
1,298 reviews
View
A resort with a swimming pool, lounge chairs, and a view of the ocean.
Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
9.2
Wonderful
147 reviews
View
Two hammocks on a sandy beach with a clear blue sky and turquoise water.
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
9.0
Wonderful
1,002 reviews
View
A coastal landscape with clear turquoise waters and a dense tree line under a bright blue sky with scattered clouds.
Captain Pips Marina & Hideaway
9.0
Wonderful
1,002 reviews
View

Top Boot Key Harbor Hotel Reviews

Yacht Haven Marina

Yacht Haven Marina

10/10 Excellent
"It was exactly what you see in the pictures. The only thing I would advise is listing the plumbing situation. We had absolutely no problem with it. However if people are looking for legitimate in door plumbing keep in mind this is a boat so it is just a little under par. But still functional. Great place and plan on staying there again. The wild life was spectacular."
bruce A 4-night trip
Posted 21 hours ago
Yacht Haven Marina
Wow!!! Deep Water Canal, Swimspa Pool, Kayaks, Walk to Ocean Front Tiki Bar!!

Wow!!! Deep Water Canal, Swimspa Pool, Kayaks, Walk to Ocean Front Tiki Bar!!

10/10 Excellent
"Great location!!"
Greg T. 7-night trip
Posted 2 months ago
Wow!!! Deep Water Canal, Swimspa Pool, Kayaks, Walk to Ocean Front Tiki Bar!!
Deep Water Canal, Swim Spa Pool, Kayaks, Walk to Ocean Front Bars & Restaurants!

Deep Water Canal, Swim Spa Pool, Kayaks, Walk to Ocean Front Bars & Restaurants!

8/10 Good
"Very well equipped house just need a couple of improvements like new houses and water connections on front of the house for washing the boat trailer , in general is a great place and location."
Abdel c. 7-night trip
Posted 2 months ago
Deep Water Canal, Swim Spa Pool, Kayaks, Walk to Ocean Front Bars & Restaurants!
W15 - 3 bed, 2 bath Caribbean Bungalow with Dockage

W15 - 3 bed, 2 bath Caribbean Bungalow with Dockage

10/10 Excellent
"Perfect for a one week fishing, boat launch not far on north side and short ride thru 7 mile with east navigation to canal and dock at house. Hose on side of house for easy end of day cleanup"
David L. 7-night trip
Posted 3 months ago
W15 - 3 bed, 2 bath Caribbean Bungalow with Dockage
Bob's Harbor View is a charming 2-bedroom, 2-bathroom retreat nestled near the picturesque Seven Mile Bridge.

Bob's Harbor View is a charming 2-bedroom, 2-bathroom retreat nestled near the picturesque Seven Mile Bridge.

10/10 Excellent
"Clean house, fast response."
Ashlyn W. 7-night trip
Posted 3 months ago
Bob's Harbor View is a charming 2-bedroom, 2-bathroom retreat nestled near the picturesque Seven Mile Bridge.
🌸Home #7 "BEACHY🏖KEEN" Full Oceanfront View Property!🌸

🌸Home #7 "BEACHY🏖KEEN" Full Oceanfront View Property!🌸

10/10 Excellent
"We had a great time, as usual the attention was amazing and the installations are amazing. we will back soon. Thanks."
Humberto L.
Posted 7 months ago
🌸Home #7 "BEACHY🏖KEEN" Full Oceanfront View Property!🌸

Other attractions near Boot Key Harbor

A sea turtle swimming underwater.
Photo by Cider Hoff

The Turtle Hospital

9.2/10 (946 reviews)
Explore the campus of The Turtle Hospital during your stay in Marathon. Stroll along the area's seaside, or simply savor its seafood restaurants.
See properties
A golf course with a curved path, palm trees, and a clear blue sky.

Florida Keys Country Club

8.2/10 (111 reviews)
Play a round of golf in Marathon at Florida Keys Country Club, and enjoy other activities such as running. Stroll along the area's marina, or simply savor its seafood restaurants.
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A beach with clear turquoise water, white sand, and palm trees.

Sombrero Beach

9.0/10 (2,464 reviews)
Play beach games; go swimming, kayaking or snorkeling; and lounge in the sun at one of Marathon’s most visited beaches.
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A sign for Crane Point Hammock with a tree logo and potted plants.

Crane Point Museum and Nature Center

8.6/10 (54 reviews)
You can spend an afternoon exploring the galleries in Crane Point Museum and Nature Center in Marathon. Discover the area's beautiful sunsets, or seek out its jogging trails.
See properties
A tall red lighthouse on a pier in the ocean.

Vaca Key

8.8/10 (411 reviews)
Commune with nature and explore the great outdoors at Vaca Key during your travels in Marathon. Stroll along the seaside or discover the area's beautiful sunsets.
See properties
A bridge over turquoise water with a clear sky.

Seven Mile Bridge

9.4/10 (3,266 reviews)
Walk, jog, cycle or drive across one of the longest bridges in North America to take in the scenic ocean views it provides.
See properties

Shady Palm Art Gallery

You can spend time browsing the exhibits at Shady Palm Art Gallery during your trip to Marathon. Stroll along the area's seaside, or simply savor its seafood restaurants.
See properties

Marathon Air Museum

You can spend an afternoon studying the exhibits at Marathon Air Museum during your travels in Marathon.
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Frequently asked questions

What's the area like around Boot Key Harbor?
Boot Key Harbor is located in Marathon. Travelers love the area for its beautiful beaches, top seafood restaurants, and dolphin viewing opportunities. If you're looking for a convenient place to stay, check out the 216 hotels and other accommodations you'll find within a mile.
What's the best hotel to stay near Boot Key Harbor?
Faro Blanco Resort Marathon Florida Keys, Curio by Hilton is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 4 outdoor pools. It's located just a short 0.6 mi (1 km) from Boot Key Harbor. Other good choices within a short distance include Tranquility Bay Beachfront Hotel and Resort and Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys.
How many hotels are there close to Boot Key Harbor?
Expedia has 216 hotels and other accommodations within a mile from Boot Key Harbor.
If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?
Yes, you'll find most hotel reservations are fully refundable if you cancel before the hotel's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the "fully refundable" filter to view the top deals on offer near Boot Key Harbor.
Where can I learn more about changing or cancelling my trip in the area near Boot Key Harbor?
To find more details about rescheduling or cancelling your stay near Boot Key Harbor, go to https://www.expedia.com/service/.
What can I see and do near Boot Key Harbor?
Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.