The Best Hotels Closest to Boot Key Harbor in Marathon for 2026

Our top choices for Boot Key Harbor hotels

Captain Pips Marina & Hideaway

0.8 mi from Boot Key Harbor

Catherine

$151 nightly

Jun 11 - Jun 12

Total with taxes and fees

On the beach, beach cabanas, sun loungers

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

0.5 mi from Boot Key Harbor

Ana M

$218 nightly

Jun 14 - Jun 15

Total with taxes and fees

On the beach, sun loungers, beach umbrellas, beach towels

Isla Bella Beach Resort & Spa

1.5 mi from Boot Key Harbor

Anna

$302 nightly

Jul 6 - Jul 7

Total with taxes and fees

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

0.6 mi from Boot Key Harbor

Kenier

$196 nightly

Jun 9 - Jun 10

Total with taxes and fees

Skipjack Resort & Marina

1.1 mi from Boot Key Harbor

Ysabel

$197 nightly

Jun 14 - Jun 15

Total with taxes and fees

Banana Bay Resort & Marina

1 mi from Boot Key Harbor

Felix

$150 nightly

Jul 2 - Jul 3

Total with taxes and fees

Tranquility Bay Beachfront Hotel and Resort

0.4 mi from Boot Key Harbor

maybelis

$297 nightly

Jun 28 - Jun 29

Total with taxes and fees

Private beach, sun loungers, beach towels, kayaking

Seascape Resort & Marina

2.5 mi from Boot Key Harbor

Jeffrey

$250 nightly

Jun 14 - Jun 15

Total with taxes and fees

Coconut Cay Resort & Marina

2.3 mi from Boot Key Harbor

Donald

$110 nightly

Jun 7 - Jun 8

Total with taxes and fees

Fairfield Inn & Suites by Marriott Marathon Florida Keys

5.2 mi from Boot Key Harbor

peggy

$170 nightly

Jun 21 - Jun 22

Total with taxes and fees

Hampton Inn Marathon - Florida Keys

5.3 mi from Boot Key Harbor

Norma

$155 nightly

Jun 14 - Jun 15

Total with taxes and fees

2 outdoor pools, open 8 AM to 9 PM, pool umbrellas, sun loungers

Glunz Ocean Beach Hotel & Resort

5.2 mi from Boot Key Harbor

Angus

$211 nightly

Jun 10 - Jun 11

Total with taxes and fees

Siesta Motel

2.4 mi from Boot Key Harbor

Karen

$108 nightly

Jun 14 - Jun 15

Total with taxes and fees

Grassy Flats Resort & Beach Club

9.7 mi from Boot Key Harbor

Shonlyn

$296 nightly

Jun 8 - Jun 9

Total with taxes and fees

Rainbow Bend Resort

9.3 mi from Boot Key Harbor

Linda

$140 nightly

Jun 7 - Jun 8

Total with taxes and fees

Gulf View Waterfront Resort

10.2 mi from Boot Key Harbor

timothy

$179 nightly

Jun 7 - Jun 8

Total with taxes and fees

Floating Sea Cove Resort & Marina

5.5 mi from Boot Key Harbor

Diana

$81 nightly

Jun 8 - Jun 9

Total with taxes and fees

Hampton Inn Marathon - Florida Keys

5.3 mi from Boot Key Harbor

Anonymous traveler

3 outdoor pools, cabanas (surcharge), pool umbrellas

Hawks Cay Resort

12.7 mi from Boot Key Harbor

Kathryne

$292 nightly

Jun 21 - Jun 22

Total with taxes and fees

Townhome | Egyptian cotton sheets, premium bedding, individually decorated

Village at Hawks Cay Villas by KeysCaribbean

12.5 mi from Boot Key Harbor

APRIL

$602 nightly

Jun 8 - Jun 9

Total with taxes and fees

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Compare popular hotels close to Boot Key Harbor

Property	Star rating	Guest rating
Captain Pips Marina & Hideaway	3.0 star property	9.0 Wonderful 1,006 reviews	View
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys	3.0 star property	9.0 Wonderful 1,003 reviews	View
Isla Bella Beach Resort & Spa	5.0 star property	9.2 Wonderful 1,170 reviews	View
Faro Blanco Resort Marathon Florida Keys, Curio by Hilton	4.0 star property	8.6 Excellent 1,161 reviews	View
Skipjack Resort & Marina	3.0 star property	8.6 Excellent 1,268 reviews	View

Top Boot Key Harbor Hotel Reviews

Isla Bella Beach Resort & Spa

10/10 Excellent

"First time staying at a resort in the Florida Keys. The whole experience was excellent giving May end sees less tourists and resort feels “private” to some extent. It’s definitely expensive given the resort fees and parking fees per night you pay for what you get. The restaurants/bars are Miami pricing and great food/drinks. Like there’s an adult only pool along with other pools. The rooms are very spacious (ours was on 3rd floor diagonal from the beach bar). We spent a whole day sitting on the beach chairs and relaxing by the bar watching the iguanas and dolphins. Would have appreciated if they provided water bottles in the room rather than us going to the water filling stations downstairs everytime to refill our bottles. There’s option to jet ski, take boat rides, etc but was too expensive for us. If you just want to enjoy some downtime away from Miami hustle/bustle sipping tropical drinks and relaxing in the pool, this resort is ideal. Just be ready to pay for the “views” and “vibes” at the resort, don’t expect getting extreme hospitality for the price though."

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

10/10 Excellent

"Second time we have stayed there. The in room fridge is a little tight, for what we like to use it for. Great location for the first half our trip. Great to have the beach chairs and cooler and umbrella!! Will definitely use that amenity again in the future."

Banana Bay Resort & Marina

6/10 Okay

"The room was good with comfy beds. We couldn’t get the room to cool down though so it was a bit warmer than we would have liked. The shower sprays everywhere outside the shower stall so we needed towel to mop it up. I ended up with glass in my foot at the pool but the pool was enjoyable other than that. The breakfast was lacking. It was frozen breakfast sandwiches or a prepackaged muffin. I don’t think I would call that a continental breakfast. Probably wouldn’t stay here again."

Yacht Haven Marina

8/10 Good

"We enjoyed our stay here. It was quiet with exception of early morning rooster calls (not fault of property mgt). We used the pool facility and enjoyed the sun and swim at a clean pool. The staff at Yacht Haven accommodated all of our requests for clean towels during our stay. The AC was quiet and provided cool lodging."

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

6/10 Okay

"The hot tub was not on the property but was accessible through the property next-door, which was a little bit of a walk. Would have given it five stars if it wasn’t for the terrible individual at check-in. I don’t remember his name, but he stayed in the room in the back, not in the front where he belonged. He checked me into a room with no view actually a view with the wood fence could not see anything it felt like a prison cell. Call down to change room and was given a room on the third floor with a much better view of the pool problem solved, but it was and seemed like he didn’t care at all about my concerns or needs. I then ask for two robes to be sent to my room and you sent me two rolls of toilet paper instead so obviously there’s something seriously wrong with somebody who doesn’t care to listen to what you’re saying or your needs. Other than that overall I would go back knowing that I would have to deal with this moron again."

Wow!!! Deep Water Canal, Swimspa Pool, Kayaks, Walk to Ocean Front Tiki Bar!!

10/10 Excellent

"I cannot recommend this property enough . The house was pristine, check in is simple, the location is awesome right in the middle of everything but on a very quiet street. The swim spa felt awesome after a long day of sightseeing. The lot across the road was great to hang out at. We used the kayaks almost every day to fish which was a blast lots of small barracuda,tarpon,snapper even a few shark snapped us off. On the very last evening a mom and baby manatee hung out for a bit in the canal.Kathy is very quick to respond. 10/10"

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

4.6/5 (946 reviews)

Explore the campus of The Turtle Hospital during your stay in Marathon. Stroll along the area's marina, or simply savor its seafood restaurants.

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Frequently asked questions

What's the area like around Boot Key Harbor?

Boot Key Harbor is located in Marathon. Travelers love the area for its beautiful beaches, top seafood restaurants, and dolphin viewing opportunities. If you're looking for a convenient place to stay, check out the 212 hotels and other accommodations you'll find within a mile.

What's the best hotel to stay near Boot Key Harbor?

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys is one of the top choices for your stay based on our traveler data, and this hotel offers 2 outdoor pools and 2 bars. It's located just a short 0.5 mi (0.8 km) from Boot Key Harbor. Other good choices within a short distance include Tranquility Bay Beachfront Hotel and Resort and Faro Blanco Resort Marathon Florida Keys, Curio by Hilton.

How many hotels are there close to Boot Key Harbor?

Expedia has 212 hotels and other accommodations within a mile from Boot Key Harbor.

If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?

Yes, you'll find most hotel reservations are fully refundable if you cancel before the hotel's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the "fully refundable" filter to view the top deals on offer near Boot Key Harbor.

Where can I learn more about changing or cancelling my trip in the area near Boot Key Harbor?

To find more details about rescheduling or cancelling your stay near Boot Key Harbor, go to https://www.expedia.com/service/.

What can I see and do near Boot Key Harbor?

Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.

Find hotels near Boot Key Harbor, Marathon from $91

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Our top choices for Boot Key Harbor hotels

Captain Pips Marina & Hideaway

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Isla Bella Beach Resort & Spa

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Skipjack Resort & Marina

Banana Bay Resort & Marina

Tranquility Bay Beachfront Hotel and Resort

Seascape Resort & Marina

Coconut Cay Resort & Marina

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Hampton Inn Marathon - Florida Keys

Glunz Ocean Beach Hotel & Resort

Siesta Motel

Grassy Flats Resort & Beach Club

Rainbow Bend Resort

Gulf View Waterfront Resort

Floating Sea Cove Resort & Marina

Hampton Inn Marathon - Florida Keys

Hawks Cay Resort

Village at Hawks Cay Villas by KeysCaribbean

Compare popular hotels close to Boot Key Harbor

Top Boot Key Harbor Hotel Reviews

Isla Bella Beach Resort & Spa

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

Frequently asked questions