Cheap Flights from San Rafael (AFA) to San Diego (SAN)

Popular airlines from San Rafael (AFA) to San Diego Intl. Airport (SAN)

Frequently asked questions

How much does a flight from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN) cost?
Secure a cheap one-way flight or cheap return flight from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN) with Expedia. Enter your travel dates and sort by "Price (lowest to highest)" to find our cheapest flight deals on this route.
What is the cheapest month to fly from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN)?
Planning your trip for is a great way to save, as it's the cheapest month for flights between AFA and SAN. You'll typically find the lowest fares during the off-season.
What is the cheapest airline that flies from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN)?
Expedia's filter tool lets you easily compare airlines, flight times and fares all in one place. Customize the search to your preferences, then sort by "Price (lowest to highest)" to find out which carrier offers the cheapest AFA to SAN flight.
How many flights per day from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN)?
Nonstop flights from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN) aren't available daily, so you'll need to take a flight with a layover. Explore your options with Expedia's filters. Enter your dates and click on either "1 Stop" or "2+ Stops."
What day of the week has the most flights from AFA to SAN?
Typically you'll find the most flight options available on a Friday. Tuesdays are often the quietest.* But this can change depending on the season, carrier and other factors.*Busiest/quietest day to travel is based on Expedia flight demand through January to December 2024.
What is the best time to fly from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN)?
Book a flight from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN) that takes off before 3 PM to reduce the risk of cancellations. Departures later than this are on average 22% more likely to be canceled.**Most reliable time of the day and month to travel recommendation is based on January through August 2024 flight status data sourced from OAG's global flight data platform.
Is it cheaper to buy a plane ticket from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN) last-minute?
Last-minute bookings from AFA to SAN are generally more expensive. To lock in the lowest prices, start searching for flights as early as possible. That said, if your travel plans are flexible, you may score a cheap ticket right before you leave.
Is it cheaper to book an AFA to SAN flight and hotel package?
Securing an AFA to SAN flight and hotel package is typically cheaper than booking separately. With Expedia, you can enjoy the convenience of organizing your trip in one place. Choose from our wide range of hotels and then add activities, car rentals and flights to your booking. Bundle it all together, and you could save hundreds of dollars.
Can I cancel or change the date of my flight from San Rafael Airport (AFA) to San Diego Intl. Airport (SAN)?
In most instances, you can cancel or reschedule your AFA to SAN flight. However, there may be additional charges, especially if you booked over 24 hours ago. Check your itinerary for the airline's rules and fees on flight changes, or if you need further information, go to our Customer Service portal.

Travel information

Origin airport
San Rafael
Destination airport
San Diego Intl.
Distance
5625 mi

Book with confidence

San Rafael to San Diego Flights

The cheapest times to fly from San Rafael to San Diego

On average, Thursday can be the cheapest time to fly, according to data from the Airlines Reporting Corporation (ARC), one of the world's biggest databases for global airline sales. The data reveals that you could save up to 16% by flying on a Thursday—the cheapest day to travel on average—instead of a Sunday—the most expensive. Some of the most affordable flights from San Rafael to San Diego are during the month of . You can find some of the cheapest flights from San Rafael to San Diego with Expedia's search tool and vast selection of airlines.

 

The best time to book a flight from San Rafael to San Diego

Sunday is one of the best days to book for cheap flights from San Rafael to San Diego: Tickets reserved on a Sunday cost between 6% and 13% less than those reserved on a Friday, according to ARC data. The data also suggests booking early can also lead to cheaper airfares. You could save 24% by buying your tickets for domestic flights at least a month in advance and 10% by booking international flights 2 months in advance.

 

How to find cheap round-trip tickets from San Rafael to San Diego

Being flexible with your dates and using Expedia's Price Drop Protection and Price Tracking features are some of the best ways of finding a cheap ticket from San Rafael to San Diego in 2026. You can also book with separate airlines for your outbound and return journeys, from one-way. Expedia also offers Price Drop Protection, so if the cost of your airfare goes down after booking, you'll receive a credit for the difference*. This is available for a small fee, and is free to One Key Gold and Platinum tier members.

 

Expedia's Price Tracking feature means you can stay on top of airfares without manually checking every day. It sends you automated price alerts for cheap San Rafael to San Diego flights and uses historical data to indicate when the best time to book is. Download Expedia's free app to activate this handy tool in a few easy taps.

 

You could also save big by booking one of Expedia's vacation packages. Bundling together your San Rafael to San Diego airfare with your accommodations and car rental is often cheaper than booking everything separately. There’s also One Key, Expedia's generous rewards program. Join for free and you could earn One Key cash on most bookings to save on future adventures.

 

*Terms apply.

 

Disclaimer: ARC The statistics are based on average round-trip ticket prices between January and August 2023. The percentages you see are averages.

 

San Rafael to San Diego Flights

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*Available to One Key members.