Quiet Resorts & Hotels in Japan from $49

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Tokyo

Tokyo

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Our top choices for Japan secluded hotels

Exterior

Annex Turtle HOTORI-AN

Annex Turtle HOTORI-AN
3.0 star property
Nikko
8.8 out of 10, Excellent, (165 reviews)
"Convenient location for walking to the shrines, etc. The Annex is located a bit further than the first Turtle Inn, but is still a lovely establishment. Kind staff. "
United States
Charity
$103 nightly
The price is $115
Jun 6 - Jun 7
Annex Turtle HOTORI-AN
Front of property - evening/night

Hotel Graphy Nezu

Hotel Graphy Nezu
3.0 star property
Taito
8.6 out of 10, Excellent, (1,003 reviews)
"Great breakfast menu."
United States
Aaron
$54 nightly
The price is $60
Jun 1 - Jun 2
Hotel Graphy Nezu
Front of property

Japanese Inn Yoshimizu

Japanese Inn Yoshimizu
3.0 star property
Higashiyama Ward
9.4 out of 10, Exceptional, (238 reviews)
"豊かな自然の中にお宿があり、内観は木の温もりや安らぐ和室となっていて、心安らぐ空間でした。 スタッフの方々がとにかく温かく、お心遣いをいただき、昔の日本の文化やおもてなしを味わいました。ありがとうございました。 また是非伺える日を楽しみにしています！"
Japan
Akiko
Japanese Inn Yoshimizu
Exterior

Hotel Nikko Narita

Hotel Nikko Narita
4.0 star property
Torika
9.2 out of 10, Wonderful, (4,833 reviews)
"Great hotel, affordable, clean, nice breakfast buffet"
Canada
Douglas
$63 nightly
The price is $69
Jun 9 - Jun 10
Hotel Nikko Narita
Terrace/patio

Villa Sanjo Muromachi Kyoto

Villa Sanjo Muromachi Kyoto
4.0 star property
Downtown Kyoto
9.8 out of 10, Exceptional, (298 reviews)
"Wonderful friendly staff, superior amenities, clean and comfortable room, great location. "
United States
Mary
$208 nightly
The price is $228
Jun 10 - Jun 11
Villa Sanjo Muromachi Kyoto
Exterior

Hotel New Otani Tokyo The Main

Hotel New Otani Tokyo The Main
4.5 star property
Chiyoda
9.4 out of 10, Exceptional, (1,203 reviews)
"Perfect location, food options are great "
United States
Hsuante
$285 nightly
The price is $314
Jun 7 - Jun 8
Hotel New Otani Tokyo The Main
The Villa Suite, Non-smoking | Premium bedding, down comforters, in-room safe, individually furnished

Shinjuku Granbell Hotel

Shinjuku Granbell Hotel
4.0 star property
Shinjuku
8.6 out of 10, Excellent, (2,116 reviews)
"Good hotel Good location Good breakfast"
Canada
Atena
$96 nightly
The price is $106
Jun 7 - Jun 8
Shinjuku Granbell Hotel
2 restaurants, breakfast, lunch served; local and international cuisine

ART HOTEL NARITA

ART HOTEL NARITA
3.0 star property
Kosuge
8.0 out of 10, Very Good, (1,951 reviews)
"The overall stay was excellent!"
Canada
Jenny
$42 nightly
The price is $49
May 31 - Jun 1
ART HOTEL NARITA
View from room

Hotel Nikko Alivila

Hotel Nikko Alivila
4.5 star property
Yomitan
9.2 out of 10, Wonderful, (1,002 reviews)
"Room was wonderful, great balcony looking over the pool and beach. "
United States
Jessica
$137 nightly
The price is $151
Jun 1 - Jun 2
Hotel Nikko Alivila
Japanese Style Room with Small Garden | Garden view

Hotel Gran Ms Kyoto

Hotel Gran Ms Kyoto
3.0 star property
Downtown Kyoto
9.0 out of 10, Wonderful, (1,010 reviews)
"Excellent area, walkable everywhere I loved their lobby spacious and all services"
United States
Angelica
$52 nightly
The price is $57
Jun 10 - Jun 11
Hotel Gran Ms Kyoto
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Japan Hotel Reviews

Hotel Villa Fontaine Grand Haneda Airport - Directly connected to Haneda Airport Terminal 3

Hotel Villa Fontaine Grand Haneda Airport - Directly connected to Haneda Airport Terminal 3

8/10 Good
"The only reason for this hotel not getting my five star rating is that its breakfast buffet is quite disappointing, not up to its other high quality services."
MIN-CHUNG 1-night trip
Posted 2 hours ago
Hotel Villa Fontaine Grand Haneda Airport - Directly connected to Haneda Airport Terminal 3

Frequently asked questions

How much do secluded hotels in Japan cost?
Secluded hotels in Japan cost between $49 and $314 per night. When you're ready to get away, Expedia will help you find a peaceful stay that won't stretch the budget.This price was available on Expedia within the past 7 days, for a hotel booking with a check-in date within the next year. Prices reflect current offers and availability is subject to change. Additional terms may apply.
How many secluded hotels are there in Japan?
Take your pick of 104 secluded hotels in Japan. Whether you'd like to get away from it all or just unwind someplace a little quieter, Expedia can help you secure the perfect digs.
Are there any family-friendly secluded hotels in Japan?
You can book secluded family-friendly hotels in destinations across Japan, including Tokyo. Mimaru Tokyo Hatchobori is a traveler favorite in this city. It has a 3-stars rating and amenities including WiFi and laundry facilities. Alternatively, find moments of zen with your group at Oakwood Premier Tokyo. Offering laundry facilities, an oven and more, this 4.5-stars property in Tokyo will make your family feel relaxed and welcome. You'll find lots of awesome things to do with your team in Tokyo. Tokyo Skytree and Shibuya Crossing offer a great day out.
Why book your secluded hotel in Japan with Expedia?
Expedia has unbeatable deals on secluded hotels in Japan. But our low prices are just for starters. You'll find a good range of accommodations available and useful filters that make it a breeze to find your perfect fit. What's more, you can join Expedia Rewards for free and get access to even more savings and discounts.
How can I find cheap secluded hotels in Japan?
With Expedia's user-friendly filter tool, finding a cheap secluded hotel in Japan is a walk in the park. To find properties that'll make your wallet smile, tailor your search results by star rating, amenities and budget. Our "neighborhood" filter also makes it easy to look for peaceful hideaways in quieter areas.
What is there to do near my secluded hotel in Japan?
There are many things to keep you on the go in Japan. If you're visiting Tokyo, check out Tokyo Imperial Palace, Akihabara Electric Town and KidZania Tokyo. Basing yourself in Kyoto? Kyoto Imperial Palace, Nijō Castle and Kyoto Aquarium are top attractions here.