Top 10 Hotels in Junction City, MO (from $61) 2026 - Competitive Prices

Go beyond your typical stay in Junction City

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Our top choices for Junction City hotels

A motel with a covered entrance, a flag, and a phone number.

A reception desk with a wooden finish, a framed black and white cityscape, and a large framed Eiffel Tower picture.

A spacious kitchen with a dining area, featuring a ceiling fan, a TV mounted on the wall, and a large rug in the center.

A living room with a black leather sofa, a wooden coffee table with a vase of flowers, a green potted plant, and a lamp.

1. Madison Inn Lodge

Fredericktown

Bawan

$88 nightly

$96 total

Sep 11 - Sep 12

Total with taxes and fees

A dining area with tables and chairs, a kitchen area, and a TV mounted on the wall.

A hotel room with a large bed, two sofas, a desk with a lamp, a microwave, and a TV.

A parking lot with a tree in bloom, a red fire hydrant, and a building in the background.

A hotel reception area with a glass partition, a reception desk, and a digital kiosk.

2. Baymont Inn and Suites by Wyndham Farmington, MO

Farmington

ILUNGA

$56 nightly

$61 total

Sep 13 - Sep 14

Total with taxes and fees

A hotel room with a large bed, two bedside tables, a nightstand, and a framed picture on the wall.

A hotel reception area with a green carpet, a reception desk, a seating area with chairs, and a poster advertising the hotel.

A modern kitchen with granite countertops, wooden chairs, and a dining table. There are various food items and a sign indicating hot beverages.

A modern waiting area with a grey sofa, a small table, and a black office chair. There are two doors with signs indicating restrooms.

3. Quality Inn Farmington

Farmington

Dave

$63 nightly

$69 total

Sep 13 - Sep 14

Total with taxes and fees

A modern kitchen with a coffee machine, a refrigerator, and a microwave.

A long, narrow hallway with patterned carpet, doors on both sides, and a ceiling light.

A laundry room with a front-loading washer and dryer, a door, and a light fixture.

A hotel room with a large bed, a smaller bed, a nightstand with a lamp, and two large framed pictures on the wall.

4. Super 8 by Wyndham Farmington

Farmington

John

$59 nightly

$64 total

Sep 13 - Sep 14

Total with taxes and fees

An indoor swimming pool with clear water, surrounded by lounge chairs and a tiled floor.

A hotel room with two beds, a flat-screen TV, a desk, and a window with blinds.

A reception desk with a wooden panel design, a bicycle mounted on the wall, and a sign reading "Hilton Honors".

A hotel room with a wooden desk, a chair, a television, a microwave, and a minibar.

5. Hampton Inn Farmington

Farmington

Charlie

$106 nightly

$115 total

Sep 13 - Sep 14

Total with taxes and fees

An indoor swimming pool with a brick border, wooden walls, and a view of the outdoors.

A spacious hotel lobby with a dining area, kitchen, and large windows.

A modern bathroom with a bathtub, a window with curtains, and a view of a green landscape.

A hotel room with two beds, a desk, a chair, a TV, and a window with curtains.

6. Crown Pointe Lodge, BW Signature Collection

Farmington

Susan

$110 nightly

$119 total

Sep 13 - Sep 14

Total with taxes and fees

A Holiday Inn Express & Suites building with a covered entrance, brick facade, and multiple windows.

An indoor swimming pool with a tiled edge, surrounded by lounge chairs and potted plants.

A lobby with a reception desk, two armchairs, a lamp, and a wall with wood grain artwork.

A hotel lobby with a central reception desk, multiple seating areas, and a tiled floor.

7. Holiday Inn Express & Suites Farmington by IHG

Farmington

Shawn

$110 nightly

$120 total

Sep 13 - Sep 14

Total with taxes and fees

A modern kitchen with dark cabinets, a built-in microwave, a flat-screen TV, and a large window with a view of the street.

A modern kitchen with a black refrigerator, dark cabinets, wooden countertops, and a bar area with stools.

A bedroom with a bed, curtains, a door, and a wall decoration.

A covered patio with a wood-beamed roof, a wood-burning stove, and outdoor furniture.

8. Ironton Hub: Near Elephant Rocks & Shut-ins

Ironton

$200 nightly

$218 total

Sep 4 - Sep 5

Total with taxes and fees

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Stay near popular attractions around Junction City

Junction City invites travelers with its blend of outdoor adventures, family-friendly activities, and vibrant urban experiences. Explore picturesque parks, delve into local history at civic landmarks, and enjoy nature preserves, making it an ideal destination for unforgettable family vacations.

Millstream Gardens Conservation Area

9.2/10 (7 reviews)

Often cited as a favorite for families and adventurers, Millstream Gardens Conservation Area offers a unique blend of historical charm and natural beauty. Located about 10 miles from Junction City, this serene preserve invites visitors to explore its scenic trails and tranquil landscapes, making it a convenient spot for a memorable day out.

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Madison County Courthouse

7.4/10 (6 reviews)

Experience the best of local history at the Madison County Courthouse, a charming historic civic building in Fredericktown. With its rich cultural vibes, this landmark is about a 1.0 mile drive from Junction City, making it an easy stop for visitors wanting to explore the area’s heritage.

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Veterans Park

Highly recommended for families and outdoor enthusiasts, Veterans Park offers a vibrant urban atmosphere perfect for relaxation and recreation. Located about 15 miles from Junction City, this park features ample green space and inviting walking paths, making it a convenient spot for visitors seeking nature close to the city.

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Farmington Dog Park

No trip is complete without a visit to Farmington Dog Park, a haven for pet owners and their furry companions. This spacious park features ample green areas for play and socialization, providing a delightful experience for dogs of all sizes. Located about 15 miles from Junction City, it’s an easy stop for those looking to unwind and enjoy time outdoors with their pets.

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Farmington Skate Park

An essential stop for active families, Farmington Skate Park offers a vibrant outdoor space perfect for skaters of all levels. Located about 22 miles by car from Junction City, this urban park combines city vibes with family-friendly fun, making it an ideal spot to enjoy time together.

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Engler Park

Families seeking outdoor fun will enjoy the inviting atmosphere at Engler Park. This urban park features green spaces perfect for picnics and play, allowing for a relaxing day immersed in nature. Located about 15 miles from Junction City, it's a lovely spot to unwind during your visit.

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Hager Lake

Perfectly suited for families and outdoor lovers, Hager Lake offers a refreshing urban park experience in Farmington, Missouri. With its scenic views and vibrant atmosphere, visitors can enjoy a variety of recreational activities. Located about 16 miles from Junction City, it’s an easy stop for a fun day out.

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Wilson Rozier Park

A must-see for families, Wilson Rozier Park offers a delightful outdoor escape in Farmington, Missouri. With its vibrant city vibes, visitors can enjoy lush green spaces and recreational activities. Located about 23 miles by car from Junction City, it’s an ideal spot for relaxation and fun during your stay.

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Top Junction City Hotel Reviews

Super 8 by Wyndham Farmington

8/10 Good

"Decent place"

Quality Inn Farmington

10/10 Excellent

"Very nice hotel and the beds are so comfortable"

Madison Inn Lodge

10/10 Excellent

"Nice and clean friendly staff"

Crown Pointe Lodge, BW Signature Collection

10/10 Excellent

"One of the cleanest hotels I have ever stayed at. Located in a very quiet area."

Comfy Country home. Pet friendly, 5 bedrooms, AC, WIFI, just outside Farmington

8/10 Good

"I've given many 10 point VRBO reviews. This property fell short only because it was a bit dated and there still was evidence of as-yet-incomplete remodeling in the enclosed porch. The country setting was beautiful. It was very clean. The enclosed porch was a great place for family meals and gatherings, though the incomplete drywall work around the doors and windows keeps my rating out of the 9-10 category. It's a good place for a large family gathering and to keep within the budget."

Bluebird Meadows with In-ground Pool and Hot Tub! 125 ACRES TO EXPLORE

10/10 Excellent

"We really enjoyed our stay! The house and pool were perfect for our family and the chickens were a hit with our 2 year old. Everything was clean and we had everything we needed! Would definitely be back!"

Missouri Castle w/ Private Lake, Pool & 100 Acres!

10/10 Excellent

"Fantastic property with a great location! Secluded with plenty to stay entertained, will definitely book again in the future!"

Charming 2-bedroom country mobile home with game room, hot tub, seasonal pool

10/10 Excellent

"Great property. Lovely hosts and lots of fun amenities. Would stay again."

Holiday Inn Express & Suites Farmington by IHG

10/10 Excellent

"Clean and well maintained as you would expect from this chain."

More cheap stays in Junction City

Baymont Inn and Suites by Wyndham Farmington, MO

1625 W Columbia St Farmington MO

$56 nightly

$61 total

Sep 13 - Sep 14

Total with taxes and fees

Super 8 by Wyndham Farmington

930 Valley Creek Dr Farmington MO

$59 nightly

$64 total

Sep 13 - Sep 14

Total with taxes and fees

8/10 Very Good! (670 reviews)

Quality Inn Farmington

1400 W Liberty St Farmington MO

$63 nightly

$69 total

Sep 13 - Sep 14

Total with taxes and fees

7.6/10 Good! (917 reviews)

Hampton Inn Farmington

850 Valley Creek Dr Farmington MO

$106 nightly

$115 total

Sep 13 - Sep 14

Total with taxes and fees

Crown Pointe Lodge, BW Signature Collection

4245 Hunt Rd Farmington MO

$110 nightly

$119 total

Sep 13 - Sep 14

Total with taxes and fees

9/10 Wonderful! (673 reviews)

Holiday Inn Express & Suites Farmington by IHG

820 Market St Farmington MO

$110 nightly

$120 total

Sep 13 - Sep 14

Total with taxes and fees

Hotels in Junction City with star-rating

Frequently asked questions

When is the best time to go to Junction City?

The best time to go to Junction City is during the spring (late April to early June) and fall (September to October) for pleasant weather and comfortable outdoor activities.Spring brings mild temperatures, blooming wildflowers, and a comfortable environment for exploring the local parks and historical sites. This is a great time for couples to enjoy leisurely walks and outdoor dining without the intense summer heat.Fall offers crisp air, colorful foliage, and moderate temperatures, making it ideal for outdoor excursions and events. Families often find this season superb for visiting local attractions and enjoying community festivals.

Can I cancel my hotel reservation on Expedia?

You can cancel your hotel reservation on Expedia, though it depends on the cancellation policy of your booking. Most bookings are refundable if canceled within 24-48 hours of the scheduled arrival. Be sure to check your booking confirmation for the exact cancellation policy. If free cancellation is available, you can cancel directly through your Expedia account by logging in, going to "My Trips", and selecting your reservation. To find flexible deals, filter your search by "Fully refundable property" for hotels in Junction City.

How much is the nightly rate at a Junction City hotel?

Prices for hotels in Junction City often vary, but you can find a great deal from $61 on Expedia. All sorts of factors affect price, such as the time of year or the days of the week you choose for your stay. Find the best deals by being flexible with your dates, and sort search results by "Price: low to high" for the cheapest rate.

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Find hotels in Junction City, MO from $61

Go beyond your typical stay in Junction City

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Junction City hotels

1. Madison Inn Lodge

2. Baymont Inn and Suites by Wyndham Farmington, MO

3. Quality Inn Farmington

4. Super 8 by Wyndham Farmington

5. Hampton Inn Farmington

6. Crown Pointe Lodge, BW Signature Collection

7. Holiday Inn Express & Suites Farmington by IHG

8. Ironton Hub: Near Elephant Rocks & Shut-ins

Stay near popular attractions around Junction City

Millstream Gardens Conservation Area

Madison County Courthouse

Veterans Park

Farmington Dog Park

Farmington Skate Park

Engler Park

Hager Lake

Wilson Rozier Park

Top Junction City Hotel Reviews

Super 8 by Wyndham Farmington

Quality Inn Farmington

Madison Inn Lodge

Crown Pointe Lodge, BW Signature Collection

Comfy Country home. Pet friendly, 5 bedrooms, AC, WIFI, just outside Farmington

Bluebird Meadows with In-ground Pool and Hot Tub! 125 ACRES TO EXPLORE

Missouri Castle w/ Private Lake, Pool & 100 Acres!

Charming 2-bedroom country mobile home with game room, hot tub, seasonal pool

Holiday Inn Express & Suites Farmington by IHG

More cheap stays in Junction City

Baymont Inn and Suites by Wyndham Farmington, MO

Super 8 by Wyndham Farmington

Quality Inn Farmington

Hampton Inn Farmington

Crown Pointe Lodge, BW Signature Collection

Holiday Inn Express & Suites Farmington by IHG

Hotels in Junction City with star-rating

Frequently asked questions

Explore a world of travel with Expedia