$354 Cheap Flights from Madison (MSN) to Juneau (JNU)

View $354 flight on Fri, Oct 31, 2025Opens in a new window

Popular airlines from Dane County Regional Airport (MSN) to Juneau, AK (JNU-Juneau Intl.)

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Cheap Flights from Madison to Juneau (MSN-JNU)

Prices were available within the past 7 days and start at $354 for one-way flights and $789 for round trip, for the period specified. Prices and availability are subject to change. Additional terms apply.

American Airlines
Fri, Oct 31 - Fri, Nov 7
MSN
Madison
JNU
Juneau
$789 Roundtrip, found 3 days ago
$789
Roundtrip
found 3 days ago
Select American Airlines flight, departing Fri, Oct 31 from Madison to Juneau, returning Fri, Nov 7, priced at $789 found 3 days ago
Alaska Airlines
Fri, Apr 24 - Fri, May 8
MSN
Madison
JNU
Juneau
$845 Roundtrip, found 5 days ago
$845
Roundtrip
found 5 days ago
Select Alaska Airlines flight, departing Fri, Apr 24 from Madison to Juneau, returning Fri, May 8, priced at $845 found 5 days ago
Alaska Airlines
Mon, Aug 18 - Fri, Aug 29
MSN
Madison
JNU
Juneau
$849 Roundtrip, found 1 day ago
$849
Roundtrip
found 1 day ago
Select Alaska Airlines flight, departing Mon, Aug 18 from Madison to Juneau, returning Fri, Aug 29, priced at $849 found 1 day ago
Alaska Airlines
Fri, Oct 31 - Fri, Nov 7
MSN
Madison
JNU
Juneau
$850 Roundtrip, found 3 days ago
$850
Roundtrip
found 3 days ago
Select Alaska Airlines flight, departing Fri, Oct 31 from Madison to Juneau, returning Fri, Nov 7, priced at $850 found 3 days ago
Delta
Sun, Aug 17 - Wed, Aug 27
MSN
Madison
JNU
Juneau
$853 Roundtrip, found 18 hours ago
$853
Roundtrip
found 18 hours ago
Select Delta flight, departing Sun, Aug 17 from Madison to Juneau, returning Wed, Aug 27, priced at $853 found 18 hours ago
Alaska Airlines
Mon, Aug 18 - Fri, Aug 29
MSN
Madison
JNU
Juneau
$854 Roundtrip, found 1 day ago
$854
Roundtrip
found 1 day ago
Select Alaska Airlines flight, departing Mon, Aug 18 from Madison to Juneau, returning Fri, Aug 29, priced at $854 found 1 day ago
Alaska Airlines
Sat, Jun 13 - Mon, Jun 22
MSN
Madison
JNU
Juneau
$856 Roundtrip, found 1 day ago
$856
Roundtrip
found 1 day ago
Select Alaska Airlines flight, departing Sat, Jun 13 from Madison to Juneau, returning Mon, Jun 22, priced at $856 found 1 day ago
American Airlines
Fri, Oct 31 - Fri, Nov 7
MSN
Madison
JNU
Juneau
$861 Roundtrip, found 3 days ago
$861
Roundtrip
found 3 days ago
Select American Airlines flight, departing Fri, Oct 31 from Madison to Juneau, returning Fri, Nov 7, priced at $861 found 3 days ago
American Airlines
Sun, Aug 17 - Wed, Aug 27
MSN
Madison
JNU
Juneau
$874 Roundtrip, found 18 hours ago
$874
Roundtrip
found 18 hours ago
Select American Airlines flight, departing Sun, Aug 17 from Madison to Juneau, returning Wed, Aug 27, priced at $874 found 18 hours ago
American Airlines
Fri, Oct 31 - Fri, Nov 7
MSN
Madison
JNU
Juneau
$880 Roundtrip, found 3 days ago
$880
Roundtrip
found 3 days ago
Select American Airlines flight, departing Fri, Oct 31 from Madison to Juneau, returning Fri, Nov 7, priced at $880 found 3 days ago

Alternative airports near Juneau

Prices were available within the past 7 days. Prices and availability are subject to change.

Select flight to Juneau Intl. JNU. Cheapest and Closest option available. Average driving time to city center is 11 minutes. Flights from $1,650
JNU
Juneau Intl.
CheapestClosest
Average driving time to city center11 min
Flights from $1,650
Flights from Madison (MSN) to Juneau (JNU)
Origin airport
Dane County Regional
Destination airport
Juneau Intl.
Airlines serving
Alaska Airlines, American Airlines, Delta
Roundtrip price
$788
Distance
2183 mi

Madison to Juneau Flights

The cheapest times to fly from Madison to Juneau

On average, Thursday can be the cheapest time to fly, according to data from the Airlines Reporting Corporation (ARC), one of the world's biggest databases for global airline sales. The data reveals that you could save up to 16% by flying on a Thursday—the cheapest day to travel on average—instead of a Sunday—the most expensive. Some of the most affordable flights from Madison to Juneau are during the month of October. You can find some of the cheapest flights from Madison to Juneau with Expedia's search tool and vast selection of airlines.

 

The best time to book a flight from Madison to Juneau

Sunday is one of the best days to book for cheap flights from Madison to Juneau: Tickets reserved on a Sunday cost between 6% and 13% less than those reserved on a Friday, according to ARC data. The data also suggests booking early can also lead to cheaper airfares. You could save 24% by buying your tickets for domestic flights at least a month in advance and 10% by booking international flights 2 months in advance.

 

How to find cheap round-trip tickets from Madison to Juneau

Being flexible with your dates and using Expedia's Price Drop Protection and Price Tracking features are some of the best ways of finding a cheap ticket from Madison to Juneau in 2025. You can also book with separate airlines for your outbound and return journeys, from $354 one-way. Expedia also offers Price Drop Protection, so if the cost of your airfare goes down after booking, you'll receive a credit for the difference*. This is available for a small fee, and is free to One Key Gold and Platinum tier members.

 

Expedia's Price Tracking feature means you can stay on top of airfares without manually checking every day. It sends you automated price alerts for cheap Madison to Juneau flights and uses historical data to indicate when the best time to book is. Download Expedia's free app to activate this handy tool in a few easy taps.

 

You could also save big by booking one of Expedia's vacation packages. Bundling together your Madison to Juneau airfare with your accommodations and car rental is often cheaper than booking everything separately. There’s also One Key, Expedia's generous rewards program. Join for free and you could earn One Key cash on most bookings to save on future adventures.

 

*Terms apply.

 

Disclaimer: ARC The statistics are based on average round-trip ticket prices between January and August 2023. The percentages you see are averages.

 

Frequently asked questions

How much does a flight from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU) cost?
Discover the latest flight deals from MSN to JNU by entering your preferred travel dates and searching on Expedia. Easily compare prices by departure date if you have flexibility with your schedule and use handy filters to explore prices for your preferred journey. As a member of One Key™, our free loyalty program, you can use Price Tracking to watch fares and receive notifications if prices go up or down.
What is the cheapest month to fly from MSN to JNU?
The cheapest flights from MSN to JNU are usually during off-peak season, when demand is lower. To save money, avoid flying during public holidays, school breaks and major local events.
What is the cheapest airline that flies from MSN to JNU?
Use the filter tool on Expedia to compare airlines and find the cheapest carrier that'll take you from MSN to JNU. Sort your results by "Price (lowest to highest)" to snap up a great deal.
How many flights per day from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU)?
There aren't any daily nonstop flights departing from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU). But you can choose flights with layovers. Filter your search on Expedia to include one or more stops, and you'll be on your way in no time.
What day of the week has the most flights from MSN to JNU?
Friday is generally the busiest day for flights, while Tuesday tends to be the quietest.* Keep in mind that flight schedules can vary depending on a number of factors, including the time of year and airline.*Busiest/quietest day to travel is based on Expedia flight demand through January to December 2024.
What is the best time to fly from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU)?
To avoid possible delays on the Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU) route, fly before 3 PM. Departures after this hour have a 22% higher chance of being canceled.**Most reliable time of the day and month to travel recommendation is based on January through August 2024 flight status data sourced from OAG's global flight data platform.
Is it cheaper to buy a plane ticket from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU) last-minute?
Waiting until just before your departure to book a flight from MSN to JNU often results in higher prices. While you may find some last-minute offers, they aren't always guaranteed. Allow some flexibility in your schedule for the best chance of scoring a bargain.
Is it cheaper to book a MSN to JNU flight and hotel package?
Booking a MSN to JNU flight and hotel package is generally cheaper than booking separately. With Expedia, you can enjoy the ease of organizing your travels in one place. Select from our wide range of accommodations and then add activities, car rentals and flights to your booking. Bundle everything together, and you could save hundreds of dollars.
Can I cancel or change the date of my flight from Dane County Regional Airport (MSN) to Juneau Intl. Airport (JNU)?
It's usually possible to reschedule or cancel your MSN to JNU flight. However, for bookings made more than 24 hours ago, additional fees may apply. Refer to your airline's policies in your itinerary to see what changes are allowed and if any costs are involved. You'll also find more details on our Customer Service portal.

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*Available to One Key members.