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Featured San Diego County Independent Hotels

See all 2,109 Hotels in San Diego County
The Horton Grand Hotel

The Horton Grand Hotel

311 Island Ave, San Diego
4.0 out of 5.0
4.3 out of 5 (3,550 reviews)
Nice hotel close to everything Very nice hotel that had an older comfort feel. Close to everything downtown such as restaurants an … - 

$102

$102
The Sofia Hotel

The Sofia Hotel

150 W Broadway, San Diego
4.0 out of 5.0
4.3 out of 5 (7,404 reviews)
There are extra Sophia hotel fees It is well located. Unfortunately, I had to pay an extra $89.75 for 5 day because of the hotel inte … - 

$125

$125
Bahia Resort Hotel

Bahia Resort Hotel

998 W Mission Bay Dr, San Diego
4.0 out of 5.0
4.1 out of 5 (4,523 reviews)
Overall, we had a great experience! We had a decent room. We were upset at first because the pictures on Expedia made the hotel look fa … - 

$99

$99
The Dana on Mission Bay

The Dana on Mission Bay

1710 W Mission Bay Dr, San Diego
4.0 out of 5.0
4.1 out of 5 (7,070 reviews)
Nice location near Mission Bay. Breakfast very well expensive even at 50 percent off as part of resort fee. Other hotel chains prov … - 

$79

$79
California Suites Hotel

California Suites Hotel

5415 Clairemont Mesa Blvd, San Diego
2.5 out of 5.0
3.3 out of 5 (1,922 reviews)
Not too bad free breakfast the rooms could have been better - 

$62

$62
The Atwood

The Atwood

1201 Hotel Circle South, San Diego
3.5 out of 5.0
3.8 out of 5 (1,100 reviews)
Very good expierience, third time we stay here and its very nice. - 

$59

$59
Lakehouse Hotel and Resort

Lakehouse Hotel and Resort

1025 La Bonita Drive, San Marcos
4.5 out of 5.0
4.6 out of 5 (1,712 reviews)
LOVE THIS HOTEL! Beautiful location, comfortable and clean rooms, excellent food from room service, nice pool and sp … - 

$119

$119
Catamaran Resort and Spa

Catamaran Resort and Spa

3999 Mission Boulevard, San Diego
4.5 out of 5.0
4.2 out of 5 (2,476 reviews)
Nice 1990s style resort The staff was friendly and the resort was clean and well maintained. - 

$129

$129
Urban Boutique Hotel

Urban Boutique Hotel

1654 Columbia Street, San Diego
3.5 out of 5.0
3.9 out of 5 (2,759 reviews)
Location is great and you are able to walk all around Little Italy and enjoy San Diego. It is like … - 

$84

$84
The Lafayette Hotel, Swim Club & Bungalows

The Lafayette Hotel, Swim Club & Bungalows

2223 El Cajon Blvd, San Diego
3.5 out of 5.0
3.9 out of 5 (2,951 reviews)
Loved the Vibe We ended up booking our room the day of, and to our surprise they upgraded us to a poolside room fo … - 

$115

$115
Bay Club Hotel & Marina

Bay Club Hotel & Marina

2131 Shelter Island Dr, San Diego
4.0 out of 5.0
4.2 out of 5 (1,994 reviews)
Great Experience Check-in took 2 minutes, and staff was friendly. Room was tidy, non-smoking as requested, and the b … - 

$99

$99
Viejas Casino & Resort

Viejas Casino & Resort

5000 Willows Road, Alpine
4.5 out of 5.0
4.6 out of 5 (706 reviews)
Great staff at Viejas I usually don't write good reviews for great customer service has been hard to come by. Working in … - 

$120

$120
Gaslamp Plaza Suites

Gaslamp Plaza Suites

520 E St, San Diego
4.0 out of 5.0
4.1 out of 5 (1,853 reviews)
Perfect spot next to the bars and clubs I loved the decor and the location of the hotel. The window are thin and even with them shut you ca … - 

$99

$99
La Jolla Shores Hotel

La Jolla Shores Hotel

8110 Camino Del Oro, La Jolla
3.5 out of 5.0
4.2 out of 5 (1,816 reviews)
Hotel on the beach If you need to be on the beach, this place is ok. Kind of dated rooms and rooms with outside doors … - 

$229

$229
Porto Vista Hotel

Porto Vista Hotel

1835 Columbia St, San Diego
4.0 out of 5.0
3.4 out of 5 (2,050 reviews)
Small but nice room with a bed, desk, TV, chair and small refrigerator. The bed was comfortable but … - 

$111

$111
Bay Inn and Suites at Seaworld

Bay Inn and Suites at Seaworld

3325 Midway Dr, San Diego
2.5 out of 5.0
2.7 out of 5 (1,661 reviews)
The kind lady who checked me in was helpful and efficient. The room is simple but provides everythi … - 

$42

$42
Harborview Inn & Suites San Diego Harbor

Harborview Inn & Suites San Diego Harbor

550 West Grape St, San Diego
2.5 out of 5.0
2.9 out of 5 (1,872 reviews)
Harborview Older hotel so expect that. Hotel sits on two busy corners. Street noise carries up. They are remod … - 

$60

$60
Pleasant Inn

Pleasant Inn

5550 Clairemont Mesa Blvd, San Diego
3.0 out of 5.0
4.1 out of 5 (563 reviews)
Nice and cheap hotel at a good location I stayed at Comfort Inn in Gaslamp district for four nights and two night for this one. This one be … - 

$72

$72
E-Z 8 Motel Old Town

E-Z 8 Motel Old Town

4747 Pacific Highway, San Diego
3.0 out of 5.0
3.0 out of 5 (529 reviews)
Everything is ok, match the price The price is cheap, but the room is not bad, you get what you pay. - 

$45

$45
Carlsbad By The Sea Resort

Carlsbad By The Sea Resort

850 Palomar Airport Road, Carlsbad
3.5 out of 5.0
3.8 out of 5 (3,910 reviews)
The staff here was so incredibly helpful, kind and supportive. They make every effort to make your … - 

$112

$112
Map

Recently booked San Diego County hotels

The Atwood
3.5 out of 5.0
Last booking: 2 minutes ago
Days Inn Mission Valley - Qualcomm - SDSU
2.5 out of 5.0
Last booking: 4 minutes ago
Heritage Inn La Mesa
2.5 out of 5.0
Last booking: 7 minutes ago
La Pensione Hotel
3.5 out of 5.0
Last booking: 10 minutes ago
Econo Lodge Inn & Suites El Cajon San Diego East
2.0 out of 5.0
Last booking: 11 minutes ago
Porto Vista Hotel
4.0 out of 5.0
Last booking: 14 minutes ago
Best Western Courtesy Inn
3.0 out of 5.0
Last booking: 18 minutes ago
The Sofia Hotel
4.0 out of 5.0
Last booking: 20 minutes ago
Best Western Plus Beach View Lodge
3.0 out of 5.0
Last booking: 23 minutes ago

Independent San Diego County Hotel Guide

Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in San Diego County, California. Known for well-appointed rooms and friendly, personalized service, each of the top Independent San Diego County hotels guarantees an unparalleled level of comfort and quality.

You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some San Diego County Independent locations may even offer extra little benefits and discounts for frequent travelers.